PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01026g03013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 330aa MW: 37644.7 Da PI: 6.4007 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.2 | 2.2e-09 | 13 | 43 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 rg W++eEde+l++ ++ +G g+W+++++ Niben101Scf01026g03013.1 13 RGLWSPEEDEKLIRHITSHGHGCWSSVPKLA 43 788************************9975 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 47 | 90 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ Niben101Scf01026g03013.1 47 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 90 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-13 | 4 | 42 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.64E-19 | 10 | 88 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 21 | 12 | 44 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-7 | 13 | 43 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 23.894 | 42 | 96 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-21 | 44 | 97 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 46 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 47 | 90 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.68E-11 | 49 | 89 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MGHHCCSKQK VKRGLWSPEE DEKLIRHITS HGHGCWSSVP KLADLRRGSF TEQEERTIID 60 VHRILGNRWA QIAKHLPGRT DNEVKNFWNS CIKKKLIAQG LDPNTHNLLI KNKTNNSTKA 120 KTHHHQDSTS VFTIDTSTNK EVISMDHIKA TLASFSPFPH SNNTTTSTTY NYTPIPNIEY 180 QNPTFTWSDQ RNQITTTAQS QTSDRNHMIT QNSILGFASC SLMESSTNIR QGETEYINEN 240 SMWHGTGIEP TTLNPAKGTE ELMQVQQEEQ FPIQTKFCDQ EDVYKVINHD QTVENTFDSS 300 NFDFDFVDST LVPCGLYTSI NSMDQISWDC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-19 | 13 | 96 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783085.1 | 0.0 | PREDICTED: transcription factor MYB46-like | ||||
Refseq | XP_016472474.1 | 0.0 | PREDICTED: transcription factor MYB46-like | ||||
TrEMBL | A0A1S4A7A4 | 0.0 | A0A1S4A7A4_TOBAC; transcription factor MYB46-like | ||||
TrEMBL | A0A1U7X9G2 | 0.0 | A0A1U7X9G2_NICSY; transcription factor MYB46-like | ||||
STRING | XP_009783085.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 2e-62 | myb domain protein 67 |