PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01001g06011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 177aa    MW: 19900.5 Da    PI: 9.4224
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01001g06011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20104155156
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               ++y+GVr++k +g+W+AeIrd      +++r +lg+f+taeeAa a+++a+ +++g+
  Niben101Scf01001g06011.1 104 KKYRGVRQRK-WGKWAAEIRDaR----RKTRLWLGTFDTAEEAALAYDKAAIEIRGA 155
                               59*******9.**********55....35*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.80E-30104160No hitNo description
SMARTSM003804.9E-33105168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-29105160IPR001471AP2/ERF domain
PROSITE profilePS5103222.062105162IPR001471AP2/ERF domain
PfamPF008472.3E-15105154IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-21105161IPR016177DNA-binding domain
PRINTSPR003678.7E-12106117IPR001471AP2/ERF domain
PRINTSPR003678.7E-12128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MASQQEHQKK EAVEKPPEID AVEKSNSQVG ESSGALPHLV RIHVTDRDAT DSSSDEEKAG  60
GEKSEQHGKT CVKEIIIENG KTEVIPKKKP KEKKDIMVLQ GDVKKYRGVR QRKWGKWAAE  120
IRDARRKTRL WLGTFDTAEE AALAYDKAAI EIRGANTFTN ILKPPPREML QTDDARV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19104161462ATERF1
3gcc_A2e-19104161462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019252206.17e-95PREDICTED: uncharacterized protein LOC109231099 isoform X1
SwissprotQ9SUE36e-31CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A1J6J7L82e-93A0A1J6J7L8_NICAT; Ethylene-responsive transcription factor crf1
STRINGXP_009783399.11e-92(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.18e-23cytokinin response factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]