PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00975g03006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-PHD
Protein Properties Length: 700aa    MW: 79469.6 Da    PI: 7.7244
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00975g03006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.94.2e-14480524953
                               HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                  Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                               ++ +eeL ++F++n  ps+e+re L+k+lgL+ ++Vk WF+N R+
  Niben101Scf00975g03006.1 480 PDAVEELRRAFAENELPSKEMRENLSKQLGLESEKVKKWFKNARY 524
                               6889***************************************97 PP
2PHD34.45e-12208263151
                               SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                       PHD   1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                               +C+ C+ +++  +++++lCd +C+ +fH++Cl+++l++e++p +   w+C+ Ck+k
  Niben101Scf00975g03006.1 208 ICAKCKLQEAfpDNDIILCDgTCNCAFHQNCLDPPLSTENIPPDdeGWFCKFCKCK 263
                               588898844445********56*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.98E-14200266IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.4E-11204264IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.202206263IPR019787Zinc finger, PHD-finger
PfamPF006284.3E-9208263IPR019787Zinc finger, PHD-finger
SMARTSM002491.9E-9208261IPR001965Zinc finger, PHD-type
PROSITE patternPS013590209260IPR019786Zinc finger, PHD-type, conserved site
CDDcd155049.29E-29209260No hitNo description
Gene3DG3DSA:1.10.10.601.5E-15456523IPR009057Homeodomain-like
SuperFamilySSF466893.46E-12468532IPR009057Homeodomain-like
PROSITE profilePS5007113.766469529IPR001356Homeobox domain
SMARTSM003898.9E-13471533IPR001356Homeobox domain
CDDcd000861.04E-10472524No hitNo description
PfamPF000461.4E-11480524IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MAGKTNKDMH KTVANLSQVK DALRRLDKKR SKLKSKSYGR AARASSSKGT VAGEGKRKEI  60
PQKAKSSKKQ SKLSCRGEEL EACNSKVNLK HENVDTGSEK LKRRRRKKRK HNADPDDVSR  120
LQRRTRYLLI KMKLEQNLID AYSAEGWKGQ SREKIRPERE LQRAKKQILQ CKLGIREIVH  180
RLDLLSSPGQ IEDSAIAPDG SVHHEHIICA KCKLQEAFPD NDIILCDGTC NCAFHQNCLD  240
PPLSTENIPP DDEGWFCKFC KCKMEIIDAT NAHIGTHFAM DSNWEDIFKE EALLPEGGES  300
LLCREQDWPS DDSEDDDYDP EKIAYSHSST DSFESGSSSE ASSASMLGSL EDELLALTGK  360
PEDGSRGKDY LSERIAGLDY EEMTDFEVLS GPRQRKAVDY IKLNDEMFGK HAPAIEQNSE  420
DEDWGPGKRK RRRKESESDA ASTLITLLES EKSCPEKRAD DEEKESFDKP AKRAIFRIPP  480
DAVEELRRAF AENELPSKEM RENLSKQLGL ESEKVKKWFK NARYMALKAR KVESAEPCQV  540
TSPTTSEGCV YETVKDKPAD QISSRDEEEN AAHACNLERS PNEETANLMI SISKKKHGKK  600
AVKPSIDKLE ATVEFGDDVS LKLLRERAKK ERRKLNSKER ERIQEAEAEM QKLCGIKDKI  660
ARLQDILLRL PNRRYRRADA SRVDESSVIF VPVAELQEKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100107LKRRRRKK
2100109LKRRRRKKRK
3101109KRRRRKKRK
4103108RRRKKR
5103109RRRKKRK
6427432KRKRRR
7427433KRKRRRK
8428432RKRRR
9428434RKRRRKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795784.10.0PREDICTED: pathogenesis-related homeodomain protein isoform X2
RefseqXP_016475638.10.0PREDICTED: pathogenesis-related homeodomain protein-like isoform X2
SwissprotP487851e-147PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A1S4AGT10.0A0A1S4AGT1_TOBAC; pathogenesis-related homeodomain protein-like isoform X2
TrEMBLA0A1U7Y9560.0A0A1U7Y956_NICSY; pathogenesis-related homeodomain protein isoform X2
STRINGXP_009795782.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106842123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.12e-97pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]