PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00956g03010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 280aa MW: 31922.6 Da PI: 7.6071 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl Niben101Scf00956g03010.1 14 RGPWSPEEDAKLKEFIHKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.008 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.42E-20 | 11 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.99E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS50090 | 4.553 | 63 | 99 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.2 | 67 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-10 | 70 | 106 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MGRAPCCYKA NVKRGPWSPE EDAKLKEFIH KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGD FSDEEDRVIC SLYASIGSRT DNDIKNYWNT KLKKKLIGLK SPLFPPTQPQ 120 TISSLFRDSY YTIAGGVEHI SSAQPNLMCN NMNFELGTNQ YSYFQPCQDE SLMNPMQATC 180 SSSDGSCNQL ISYGKDIKQE EMGNQIPTTF EETQKFTLHY GNNIIDQNSN GYQSSQFQYY 240 DIEQVKELIS SSSSGNGCNN SSFFFYGDEN KTNERGMYYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-18 | 14 | 106 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009779682.1 | 1e-164 | PREDICTED: transcription factor RAX2-like | ||||
Refseq | XP_016485357.1 | 1e-164 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A1S4B939 | 1e-163 | A0A1S4B939_TOBAC; transcription factor RAX2-like | ||||
TrEMBL | A0A1U7WIB2 | 1e-163 | A0A1U7WIB2_NICSY; transcription factor RAX2-like | ||||
STRING | XP_009779682.1 | 1e-163 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-65 | myb domain protein 36 |