PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00941g00007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 154aa MW: 17451.3 Da PI: 5.5872

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00941g00007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.3	7.7e-18	22	65	1	48
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 ++y+GVr+++ +gr++AeIr p++ r+r++lg+f+taeeAa a++ Niben101Scf00941g00007.1 22 TKYHGVRRRP-WGRYAAEIRNPNT---RQRHWLGTFDTAEEAALAYDI 65 69******.******944...5****************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	9.49E-27	22	80	No hit	No description
Pfam	PF00847	5.9E-12	22	64	IPR001471	AP2/ERF domain
SMART	SM00380	1.5E-28	23	87	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-26	23	80	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.68E-18	23	81	IPR016177	DNA-binding domain
PROSITE profile	PS51032	20.574	23	81	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-9	24	35	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-9	46	62	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MENILPQLHV RNLGRRSSRH STKYHGVRRR PWGRYAAEIR NPNTRQRHWL GTFDTAEEAA 60 LAYDISSIAF CGIKNARTNF VYPFMSFSSS SSQPPPPPPP PPPPPLLSTP ELEVIENEED 120 DNDNDNDNDD DESLVIASIL QSFRHSNTLD KLAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-15	14	72	5	64	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Regulates gene expression patterns in meristems and thus modulates organ development. Required for correct embryo patterning and cotyledon organogenesis. Modulates auxin signaling pathway in early embryos. Involved in the cytokinin signaling pathway that promotes shoot regeneration. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11752375, ECO:0000269\|PubMed:12615942, ECO:0000269\|PubMed:17376809}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinins. {ECO:0000269\|PubMed:11752375}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009781053.1	1e-72	PREDICTED: ethylene-responsive transcription factor LEP-like
Swissprot	Q9SAD4	4e-25	ESR1_ARATH; Ethylene-responsive transcription factor ESR1
TrEMBL	A0A1U7WR45	3e-71	A0A1U7WR45_NICSY; ethylene-responsive transcription factor LEP-like
STRING	XP_009781053.1	5e-72	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13910.1	1e-26	ERF family protein

Publications ? help Back to Top
Seeliger I, et al. The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition. Mol. Genet. Genomics, 2016. 291(5): p. 1835-49 [PMID:27277595] Iwase A, et al. WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis. Plant Cell, 2017. 29(1): p. 54-69 [PMID:28011694] Capua Y,Eshed Y Coordination of auxin-triggered leaf initiation by tomato LEAFLESS. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(12): p. 3246-3251 [PMID:28270611] Chandler JW,Werr W DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis. J. Exp. Bot., 2017. 68(13): p. 3457-3472 [PMID:28859377] Luo L,Zeng J,Wu H,Tian Z,Zhao Z A Molecular Framework for Auxin-Controlled Homeostasis of Shoot Stem Cells in Arabidopsis. Mol Plant, 2018. 11(7): p. 899-913 [PMID:29730265]