PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00885g20004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 891aa    MW: 98831.2 Da    PI: 6.69
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00885g20004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.6e-23128229199
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD
  Niben101Scf00885g20004.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPVQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGD 210
                               99*****************************85545444..8******************************************* PP

                               EEEEEE-SSSEE..EEEEE-S CS
                        B3  79 fvvFkldgrsefelvvkvfrk 99 
                               +++F   ++++ +l+++++r+
  Niben101Scf00885g20004.1 211 SIIFI--WNEKNQLFLGIRRA 229
                               *****..8889999****997 PP
2Auxin_resp116.32.7e-38254337183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               aahaa+t s F+++YnPr+++s+Fvv+++k++ka++ +++svGmRf+m fete+ss rr++Gt++gv dldpvrWpnS+Wrs+k
  Niben101Scf00885g20004.1 254 AAHAAATISRFTIFYNPRSCPSDFVVPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGVGDLDPVRWPNSHWRSVK 337
                               79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-47116257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-41122243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.27E-21127223No hitNo description
SMARTSM010192.1E-24128230IPR003340B3 DNA binding domain
PfamPF023627.9E-22128229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.365128230IPR003340B3 DNA binding domain
PfamPF065073.8E-33254337IPR010525Auxin response factor
SuperFamilySSF542776.08E-7752833No hitNo description
PfamPF023092.0E-6753843IPR033389AUX/IAA domain
PROSITE profilePS5174523.546758842IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    Send to blast
MRLSSAGSNQ QSPEGENKCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVTASTNKE  60
AEAHIPNYPS LAPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPEEQKEA SFLPLDFGIP  120
RKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPVQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SIIFIWNEKN QLFLGIRRAN RSQTVMPSSV  240
ISSDSMHLGL LAAAAHAAAT ISRFTIFYNP RSCPSDFVVP LAKYVKAVYH TRISVGMRFR  300
MLFETEESSV RRYMGTITGV GDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEVEPL  360
TTFTMYPSPF PLRLKRSWPP GFPALSGMKD DDMVMNPMMW LHDVGDGGTQ SINFQGIGVA  420
PWMQPRIDVP IGGMQMDIYQ AMAAGALQDL RSVDPSKQAL TSLLQLQQSN GVTNSTSGLL  480
YPQLFQQSQG QTAFLPSMAQ GQSQVQPVSQ PHIFQQQMLH QNSSNTIHQQ QQQYPLEQRP  540
PLQQQQAIRQ LDSSSQSQQT SMQAFCSTQQ ESFTDTKVNH ATNSIVNPLH RLSGAVTRDE  600
PSQLVNVPRS SSLLSPTGWP PKRVAVDPVP PSASSQRMSP YIDQPGTPNK NVSQNALSLP  660
TFPGRDCPVG QEGNNDPNNH LLFGFNIDSP SLMQSDMRSL RGVGSDCEST NVPFASSNYL  720
SNTGNDFSQN PVMALSGCIN VPGFTQTSEN VGQESPHNTF VKVYKSGSFG RSLDITKFGS  780
YHELRSELAR MFGLEGLLED PLRSGWQLVF VDRENDVLLL GDDPWPEFVN SVWCIKILSP  840
HDVQQMGRQG LELLNSVSKS RSSNNSCDDF ANRSESRNMA SGIMSVATLD Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1602035851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797609.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1U7YED20.0A0A1U7YED2_NICSY; Auxin response factor
STRINGXP_009797608.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]