PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00878g04013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SBP | ||||||||
Protein Properties | Length: 257aa MW: 28647.5 Da PI: 6.7908 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 42.3 | 1.9e-13 | 168 | 203 | 2 | 37 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETT CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsg 37 Cq++gC++ l++ak+yhrrhkvCe+hska++v++++ Niben101Scf00878g04013.1 168 CQADGCNTVLTHAKHYHRRHKVCEFHSKAATVIAAE 203 ********************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.0E-13 | 161 | 203 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 12.28 | 165 | 242 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.75E-12 | 166 | 201 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.2E-9 | 168 | 202 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
LIGSEQLGEI MLDYEWGIGE ETTQETDQND QFFDPFVNPH AHFSPIRNHL DQQQQQQIQN 60 HQFPQFQTTP NNNHFSFLYN PHTYDVPYSQ THHTSMLSLQ PTGSTGFNTV LPKSEPQFMG 120 GIDFANTSRI GLNLGGRTYF ASSGDDFVSR IFRRTRAVEA GSVNSPKCQA DGCNTVLTHA 180 KHYHRRHKVC EFHSKAATVI AAESPAESGA HSSTVTVAIS PPRISMDCFR QRTYQQAVAH 240 ATTTSSTSTC SLFFSNG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009593420.1 | 1e-118 | PREDICTED: squamosa promoter-binding-like protein 8 | ||||
Refseq | XP_009593422.1 | 1e-118 | PREDICTED: squamosa promoter-binding-like protein 8 | ||||
Swissprot | Q8GXL3 | 5e-40 | SPL8_ARATH; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A240EUR2 | 1e-117 | A0A240EUR2_TOBAC; Squamosa promter-binding-like protein 8 | ||||
STRING | XP_009782498.1 | 1e-117 | (Nicotiana sylvestris) | ||||
STRING | XP_009593420.1 | 1e-117 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4846 | 23 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.2 | 2e-38 | squamosa promoter binding protein-like 8 |
Publications ? help Back to Top | |||
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