PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00872g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 408aa    MW: 45069.9 Da    PI: 8.2226
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00872g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like54.23.1e-172542862456
                   G2-like  24 sekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                               +e+AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Niben101Scf00872g01003.1 254 IEVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 286
                               689****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015571.0E-14247286IPR006447Myb domain, plants
SuperFamilySSF466893.23E-7248289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-14251289IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MMINNHENNY TEKMQRCQQY IDALEQERNK IQVFSRELPL CLELVTQAIE TYKQQLSGTT  60
TEYNINTQSD VECSEEHTSS DVPILEEFIP LKGTFSHEDE DEDEDERDSH KSKSYNISDT  120
SCSKDNKNSD KSCKKSDWLR SVQLWNNNQT PDPTPKEELT PKKVAVVEVK KNGSGGAFHP  180
FKKEKSAAAS TEPPTSAVVT AAASSTAETG NXNRRPQPLL RRQLVPRRRP AIEVKKKRKM  240
KKENKEGVGL LNYIEVATPK QIRELMKVDG LTNDEVKSHL QKYRLHTRRP SPSSIHNNHQ  300
QPPQFVVVGG IWVPPPEYSA MAAAAAPSIS GEASGVAKSN GIYAPIATLP KGPLHDISGG  360
TLKQRQQNNK PSDSSERGSG SHSDGGGVHS NSPATSSSTH TTTASPPY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233240VKKKRKMK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019256850.10.0PREDICTED: myb family transcription factor EFM-like
TrEMBLA0A1J6HTQ80.0A0A1J6HTQ8_NICAT; Myb family transcription factor efm
STRINGXP_009788853.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52192438
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.15e-36G2-like family protein