PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00862g02053.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 439aa MW: 47051.5 Da PI: 9.534

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00862g02053.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.8	3e-10	152	196	4	54
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 ++r rrk+kNRe+A rsR+RK+ eL +kv Le+eN++Lkke k Niben101Scf00862g02053.1 152 DRRLRRKIKNRESAARSRARKQN---ELVNKVSLLEEENMKLKKE---KAK 196 7899***************96...6889***********65...444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.4E-7	148	196	No hit	No description
SMART	SM00338	0.0035	149	203	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-7	152	194	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.84E-6	153	197	No hit	No description
CDD	cd14707	6.08E-15	153	203	No hit	No description
PROSITE pattern	PS00036	0	156	171	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MKNRRKAVSG FEQKYIDTWI PHTNDNQFPV FFTNSSSSSA SLTLAKAISS NTVDKVWRGI 60 QQGQTARNLD GMNDQERKPT LGETTLEDYL VKAGLFGADA SLGHTMSLDN PTAAQNFVPS 120 IGLSPSPSID ALSDTPVSGR KRDATDFDKT LDRRLRRKIK NRESAARSRA RKQNELVNKV 180 SLLEEENMKL KKEKAKTAAS LKACSIFPVL DSQDLLQIRD KEFYFLLPIR SILGGPIGPS 240 RHHVSVNYPV GGSPIVGPHH SHQQQHVPLP PAVAYGGGVG KKGLLRGREY YEEEYADDDG 300 GEDGSGAKKM RRGDGIEGGG GYGYGSGGKA TISGHLGGPI GPSRHHVSVN YPVGGSPIVG 360 PHHSHQQQHV PLPPAVAYGG GIGKKGLLRG REYYEEEYAD DDGGEDGSGA KKMRRGDGIE 420 GGGGYGYGSG GKATISGHL

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MKNRRKAVSG FEQKYIDTWI PHTNDNQFPV FFTNSSSSSA SLTLAKAISS NTVDKVWRGI  60
QQGQTARNLD GMNDQERKPT LGETTLEDYL VKAGLFGADA SLGHTMSLDN PTAAQNFVPS  120
IGLSPSPSID ALSDTPVSGR KRDATDFDKT LDRRLRRKIK NRESAARSRA RKQNELVNKV  180
SLLEEENMKL KKEKAKTAAS LKACSIFPVL DSQDLLQIRD KEFYFLLPIR SILGGPIGPS  240
RHHVSVNYPV GGSPIVGPHH SHQQQHVPLP PAVAYGGGVG KKGLLRGREY YEEEYADDDG  300
GEDGSGAKKM RRGDGIEGGG GYGYGSGGKA TISGHLGGPI GPSRHHVSVN YPVGGSPIVG  360
PHHSHQQQHV PLPPAVAYGG GIGKKGLLRG REYYEEEYAD DDGGEDGSGA KKMRRGDGIE  420
GGGGYGYGSG GKATISGHL

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12596	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	7e-19	bZIP family protein