PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00859g04007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 467aa    MW: 51985.3 Da    PI: 6.6822
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00859g04007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-142774148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+ Ed +l ++vk++  g+W+++ r  g+ R++k+c++rw ++l
  Niben101Scf00859g04007.1 27 KGPWTATEDAILMEYVKKHVEGNWNAVQRNSGLMRCGKSCRLRWANHL 74
                              79******************************************9986 PP
2Myb_DNA-binding47.83.3e-1580123146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +g+++++E+ +++++++++G++ W++ a+ ++ gRt++++k++w++
  Niben101Scf00859g04007.1  80 KGAFSPQEERIIIELHAKFGNK-WARMAAQLP-GRTDNEIKNYWNT 123
                               799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7252274IPR017930Myb domain
SuperFamilySSF466895.47E-2825121IPR009057Homeodomain-like
SMARTSM007174.1E-112676IPR001005SANT/Myb domain
PfamPF002491.9E-122774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-222881IPR009057Homeodomain-like
CDDcd001673.57E-92974No hitNo description
PROSITE profilePS5129425.54375129IPR017930Myb domain
SMARTSM007174.5E-1679127IPR001005SANT/Myb domain
PfamPF002491.6E-1480123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2582128IPR009057Homeodomain-like
CDDcd001671.83E-1182125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MGPDDRETKV SSGGGRNGGT SRQALKKGPW TATEDAILME YVKKHVEGNW NAVQRNSGLM  60
RCGKSCRLRW ANHLRPNLKK GAFSPQEERI IIELHAKFGN KWARMAAQLP GRTDNEIKNY  120
WNTRLKRRQR AGLPIYPQEL QQQNQQENNQ HQSLLSSPYD PKRSTYNNSN PPSFSLLDIF  180
NPSTMKPSIT QQFPLNNNTI FRDPPKGISL TLPSSIRNSQ FSSLSPSVPN NNFGRGLSNS  240
MPVPSFQNNY PGFNNFTTRP FMGNFHSNPN ELISGIGGIN NIDYPSGQSS IPVTASSSEN  300
TGSDFGSSDA NNYANIAGLS RGNSGLLEDL LEESQTLTTR VVKIENQSNY LHLKEEEADY  360
KGKSLWEDYG LVEEEGEEAI LTEESVYSFA HGVDITLNTV PVPNWYDERD GKKNSNGQLS  420
HVANGGDHKA ENQAEDFSKS QVVTNSGPGN HDWEIGGCYW NNMPSFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27251285107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592281.10.0PREDICTED: transcription factor RAX3
TrEMBLA0A1S3Y3X80.0A0A1S3Y3X8_TOBAC; transcription factor RAX3
STRINGXP_009592281.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.21e-69myb domain protein 101