PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00858g03003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 583aa    MW: 64837.5 Da    PI: 7.4802
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00858g03003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.31.1e-1262135821373
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++lL++cA+a++ ++l    +l+a+ ++  s +gdp+qRl ay++e+L ar   s++++y+al+++e +     + l+++++++
  Niben101Scf00858g03003.1 213 LKQLLIACARALAGNKLDDFGSLIAKARNAISITGDPIQRLGAYIVEGLVARKEASGTNIYRALRCKEPA---GGDLLSYMHILY 294
                               689******************************************************************9...9*********** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                               e++P+lkf++++a  aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + l  +g+rL+ +
  Niben101Scf00858g03003.1 295 EICPYLKFGYMAASGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPSGAPHVRITGIDDPVSKyaRGDGLALVGKRLTYI 379
                               *****************************************************************999999************** PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                                e++++p+ef++ v    ++++ ++L+v+pgEalaVn+ l lh+++desv+++++rde+L++vksls+kvv++veqe+++n+++F
  Niben101Scf00858g03003.1 380 SEKFNIPVEFHA-VPVFAAEVTRDMLDVRPGEALAVNFPLVLHHTPDESVDVTNPRDELLRMVKSLSSKVVTLVEQESNTNTAPF 463
                               ************.6888999***************************************************************** PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                               + rfleal+yy a+f+s++++l r+ +eri+vE+++l+r+ivnv+aceg+er+erhe l+kW+ r+++aGF+++pls+++++ +k
  Niben101Scf00858g03003.1 464 FPRFLEALDYYCAMFESIDVTLERDRKERINVEQHCLARDIVNVIACEGKERVERHELLGKWKLRFTMAGFRQYPLSSYVNSVIK 548
                               ************************************************************************************* PP

                      GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               +llr ++ + y++ e++g+++lgWkdr+L+s+SaW
  Niben101Scf00858g03003.1 549 SLLRCYS-EHYTLVEKDGAMLLGWKDRNLISASAW 582
                               ***9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.799187564IPR005202Transcription factor GRAS
PfamPF035143.8E-124213582IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MESHHLYGYG VTGANLSYSC SKATTPSLPN RLLGTLKFES RNSPNSPFAN YFDPDTPTTL  60
SDSLERHSST ENISGTSPSS NSSLDYNHYF HRPSPSLNFR PNTLLVRSGG TSLLQYANHS  120
QNMKHGLLQL ETALMGLEEE ATTSSPSAGD IMQPQTSGQR SKIWNQEDQV SRRIERQPSH  180
VSAFGISSSG IHSEKRHKAM EDLSLRGIPS GNLKQLLIAC ARALAGNKLD DFGSLIAKAR  240
NAISITGDPI QRLGAYIVEG LVARKEASGT NIYRALRCKE PAGGDLLSYM HILYEICPYL  300
KFGYMAASGA IAEACRNEDR IHIIDFQIAQ GTQWMTLLQA LAARPSGAPH VRITGIDDPV  360
SKYARGDGLA LVGKRLTYIS EKFNIPVEFH AVPVFAAEVT RDMLDVRPGE ALAVNFPLVL  420
HHTPDESVDV TNPRDELLRM VKSLSSKVVT LVEQESNTNT APFFPRFLEA LDYYCAMFES  480
IDVTLERDRK ERINVEQHCL ARDIVNVIAC EGKERVERHE LLGKWKLRFT MAGFRQYPLS  540
SYVNSVIKSL LRCYSEHYTL VEKDGAMLLG WKDRNLISAS AWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-602105831375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788119.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_009788120.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_016475625.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1S4AG000.0A0A1S4AG00_TOBAC; scarecrow-like protein 21
TrEMBLA0A1U7XNQ00.0A0A1U7XNQ0_NICSY; scarecrow-like protein 21
STRINGXP_009788119.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-170GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]