PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00853g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 303aa MW: 32882.2 Da PI: 5.7865 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35 | 3.3e-11 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ +v+++G g W+tI + R+ ++k++w+++ Niben101Scf00853g00001.1 5 KQKWTSEEEAALKLGVAKYGVGKWSTILKDPEfagvlRSRSNVDIKDKWRNL 56 79************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.563 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-15 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-8 | 5 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.98E-20 | 6 | 56 | No hit | No description |
SMART | SM00526 | 1.6E-12 | 118 | 183 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 2.18E-13 | 119 | 196 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 21.397 | 120 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 1.3E-12 | 122 | 188 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 2.6E-8 | 124 | 181 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MGAPKQKWTS EEEAALKLGV AKYGVGKWST ILKDPEFAGV LRSRSNVDIK DKWRNLHAMV 60 SGRGSRQPGR TGYKSIQPTV KHVDGVLHVS TVFENGIEAL DAKSLAASYG KVEDVGSKEA 120 ISRWDDLILE VIAGLKEPRG SSRTTISSYL EEHFMAPPDF EKLFVANLKA LVENGRLIKA 180 KHKYRISPGS VLSDARGNDF PLLLEWKQKD SPKLENNGVR ILTKAQIDAE LAQMMSMSAE 240 EAAAAATQAV AEAEAATAEA ERAARDAEKA EAEAEAEAEA AQCFAEAALK ALNPRTMDLD 300 CNS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622790.1 | 1e-164 | PREDICTED: single myb histone 5-like isoform X1 | ||||
TrEMBL | A0A1S3YDK3 | 1e-161 | A0A1S3YDK3_TOBAC; single myb histone 6-like isoform X1 | ||||
STRING | XP_009622790.1 | 1e-163 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5122 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 5e-61 | telomere repeat binding factor 1 |