PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00853g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 303aa    MW: 32882.2 Da    PI: 5.7865
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00853g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.3e-11556147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                              +++WT eE+  l+ +v+++G g W+tI +          R+  ++k++w+++
  Niben101Scf00853g00001.1  5 KQKWTSEEEAALKLGVAKYGVGKWSTILKDPEfagvlRSRSNVDIKDKWRNL 56
                              79************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.563161IPR017930Myb domain
SuperFamilySSF466891.72E-15258IPR009057Homeodomain-like
SMARTSM007171.7E-8459IPR001005SANT/Myb domain
PfamPF002491.7E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-14556IPR009057Homeodomain-like
CDDcd116602.98E-20656No hitNo description
SMARTSM005261.6E-12118183IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.18E-13119196IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.397120188IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.3E-12122188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.6E-8124181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKLGV AKYGVGKWST ILKDPEFAGV LRSRSNVDIK DKWRNLHAMV  60
SGRGSRQPGR TGYKSIQPTV KHVDGVLHVS TVFENGIEAL DAKSLAASYG KVEDVGSKEA  120
ISRWDDLILE VIAGLKEPRG SSRTTISSYL EEHFMAPPDF EKLFVANLKA LVENGRLIKA  180
KHKYRISPGS VLSDARGNDF PLLLEWKQKD SPKLENNGVR ILTKAQIDAE LAQMMSMSAE  240
EAAAAATQAV AEAEAATAEA ERAARDAEKA EAEAEAEAEA AQCFAEAALK ALNPRTMDLD  300
CNS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622790.11e-164PREDICTED: single myb histone 5-like isoform X1
TrEMBLA0A1S3YDK31e-161A0A1S3YDK3_TOBAC; single myb histone 6-like isoform X1
STRINGXP_009622790.11e-163(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.35e-61telomere repeat binding factor 1