PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00846g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 394aa    MW: 43034.4 Da    PI: 4.8106
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00846g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.35.9e-21177227256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Niben101Scf00846g02001.1 177 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 227
                               59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.92E-34176236No hitNo description
SMARTSM003805.8E-38177240IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-32177235IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-23177235IPR016177DNA-binding domain
PROSITE profilePS5103223.235177234IPR001471AP2/ERF domain
PfamPF008472.1E-14178227IPR001471AP2/ERF domain
PRINTSPR003674.1E-11178189IPR001471AP2/ERF domain
PRINTSPR003674.1E-11200216IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MAAVIDIYNN STSSSNNSSF FSDPLSEELM KALEPFMKGA SCSSSISPSV SPSSSSSSSS  60
SSSPSTSSSS CFYPFGEPNF YTDFCTIPSS SFNPMGRVAE TGSIELNHLT PSQIFQIQAQ  120
IQFQNQQQQL LLLQQQSLGL LPTTPTYSKS LNSINYLGLK PVPMKQSGGA VQKPTKLYRG  180
VRQRHWGKWV AEIRLPKNRT RLWLGTFDTA EEAALAYDKA AYKLRGEFAR LNFPHLRHQL  240
NNELSDFKPL HSSVDAKLEA ICQNLANSDG LSSNNNTDSK PRKSKKAASK LDSDSVQDCP  300
ENVNVKIEAT SSSSPTPSEE SSLSAVXDAV QDCPENVSVK IEATSSCSPT PSEESSSSPE  360
SDITFLDFIE PSFDESENFF LPKYPSVEID WAAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22176234160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-22176234463ATERF1
3gcc_A3e-22176234463ATERF1
5wx9_A1e-21164235173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798155.10.0PREDICTED: ethylene-responsive transcription factor RAP2-13-like
TrEMBLE6Z2770.0E6Z277_NICBE; Transcription factor DREB2a
STRINGXP_009798155.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.11e-46ERF family protein