PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00839g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 25197.1 Da PI: 6.8968 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 7.7e-20 | 86 | 135 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+W+AeIrdp + +r++lg+f taeeAa+a+++ + +++ge Niben101Scf00839g00006.1 86 YRGVRQRP-WGKWAAEIRDP-----HkaQRVWLGTFITAEEAARAYDKKAIEFRGE 135 9*******.**********7.....337*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.907 | 85 | 142 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-36 | 85 | 148 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-32 | 85 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-22 | 85 | 144 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.88E-31 | 86 | 144 | No hit | No description |
Pfam | PF00847 | 5.1E-12 | 86 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 86 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 108 | 124 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVSALRHVIS GADGKTDGEA AQLLREVENA RSASILPRRS IVEPAVSAAT YLACHIGNTT 60 TTFHVKQENL ELQKGRRRRR NTKKEYRGVR QRPWGKWAAE IRDPHKAQRV WLGTFITAEE 120 AARAYDKKAI EFRGEKAKTN FPISEYAAAA ATAVTDHHNN KMPLVVEELQ VQNGVDNIIV 180 AGDDNGESSI HNGDDNGESN MQTGDDFWDT LEDDGLVKWI TKNMSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 84 | 143 | 4 | 64 | ATERF1 |
3gcc_A | 1e-21 | 84 | 143 | 4 | 64 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016497545.1 | 1e-136 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | A0A1S4C8T0 | 1e-135 | A0A1S4C8T0_TOBAC; ethylene-responsive transcription factor ERF109-like | ||||
STRING | XP_009772463.1 | 1e-135 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 1e-30 | ERF family protein |