PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00821g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 539aa    MW: 60809.4 Da    PI: 7.133
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00821g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP98.17.7e-31250318277
                               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                               Cqv gC++dls+ k+yh+rhkvC+ hsk+++v+v+g+eqr       fh l efDe+krsCr rLa+hnerrrk+q
  Niben101Scf00821g02001.1 250 CQVYGCNKDLSSSKDYHKRHKVCDEHSKSAMVIVNGIEQR-------FHLLAEFDEGKRSCRMRLAGHNERRRKPQ 318
                               **************************************97.......7**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.0E-23243304IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.247247317IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-29249322IPR004333Transcription factor, SBP-box
PfamPF031101.2E-21250316IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MEPMNYALEG SGLLFPDNIE MPVGAVSKRN IVKGWNLKNP FSDVDRRIFS TIQEIIGNTE  60
SAESGIADIL EKCSSSKQWS GGLGAETVDD SRKMLSTSVI TFDPILEEVK LDERFNHTAN  120
GSNYPIALPI GLKLEQSIEH GEVRNSQSSK GSSILSLAES LLPMKKDYSD SPICQVHGLS  180
LAESLLPMKK DYSDSPICQV HGQREDNSIV YREVKSNSYL METSALSSLE PLLLGKRSRT  240
KNMHSQDLLC QVYGCNKDLS SSKDYHKRHK VCDEHSKSAM VIVNGIEQRF HLLAEFDEGK  300
RSCRMRLAGH NERRRKPQFD THWGSRLFEM TSQRRASFLF PEIHPGSSFS QERFEDHSKH  360
IKLEEKPTCI SQLAVAVKKK QSPLKSFQHP VRATFSVQEL SAGQNSACAL SLLSAHSQHH  420
LHNSENHCPH LKRDHNLQNI CGLSASRSFT SNEVYSSEVF EIDRIVQVLD DSQAVSTDDL  480
RERCVRRSNS MNSKHDLSLE DGPTVDLVQL SSHLQRVEQL KNSYQVKQEN DMFRCFTTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-202493161084squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600444.10.0PREDICTED: squamosa promoter-binding-like protein 6
RefseqXP_018626210.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A125SZN40.0A0A125SZN4_TOBAC; Squamosa promoter binding protein NtabSPL6-7
STRINGXP_009600444.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68311933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.12e-40SBP family protein