PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00797g20014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 471aa    MW: 53134.9 Da    PI: 6.677
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00797g20014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS469.12.5e-143474681374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++lLl+cA++vssg+le+a+ +L ++s+lasp+gd+mqR+a+yfteALa r++rs+s+++kal++++ s    se + ++k+f+
  Niben101Scf00797g20014.1  47 LIHLLLACANHVSSGNLENANIALDHISQLASPNGDTMQRIASYFTEALADRILRSWSGICKALRSTKLS--VFSEDILVRKMFF 129
                               689*************************************************************999998..699********** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                               + +P+lk++++++NqaI ea+ege++vHi+D++++++lQW aLlq L++Rpegpp+lRiTgv++    +ke l +++  L++ Ae
  Niben101Scf00797g20014.1 130 QFFPFLKVAFVVTNQAIIEAMEGEKMVHIVDLNAGEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKEVLDQMAYVLTQEAE 210
                               ****************************************************************....9**************** PP

                      GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll......................................... 214
                               +l++ f+fn  v+++led+++e+Lr+k+gEala+++v+qlh+ll                                         
  Niben101Scf00797g20014.1 211 KLDIAFQFNQ-VVSQLEDIDVEKLRIKTGEALAISSVMQLHTLLghdsepkkksplpfkhsngvnlhralinqntlgefleqdkg 294
                               **********.799*********************************************************************** PP

                      GRAS 215 ..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                                             ++ ++++ + d +L+++++lsPkv+vv+eq+++hn+++++er++e+l+yy+alfd+le+ lpr+s er kv
  Niben101Scf00797g20014.1 295 hmangyspsndmasSSLLCSTTKMDGFLNALWGLSPKVMVVTEQDSNHNGTTLMERLSESLHYYAALFDCLESALPRTSLERLKV 379
                               *********99986555556668999*********************************************************** PP

                      GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                               E++llg+ei+n++aceg er+erhe+lekW +r++ aGF++vpls++a+ qa++ll+ ++s+gy+++ee+g++v++W+dr+L+sv
  Niben101Scf00797g20014.1 380 EKMLLGEEIKNIIACEGIERKERHEKLEKWFQRFDVAGFGNVPLSYYAMLQARRLLQSYSSEGYKIKEENGCVVIYWHDRALFSV 464
                               ************************************************************************************* PP

                      GRAS 371 SaWr 374
                               S+Wr
  Niben101Scf00797g20014.1 465 SSWR 468
                               ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.11721448IPR005202Transcription factor GRAS
PfamPF035148.6E-14147468IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MLQDDGSSSV TSSSPLQKFP MMSLSPGFGS SNQWLKELKS EERGLYLIHL LLACANHVSS  60
GNLENANIAL DHISQLASPN GDTMQRIASY FTEALADRIL RSWSGICKAL RSTKLSVFSE  120
DILVRKMFFQ FFPFLKVAFV VTNQAIIEAM EGEKMVHIVD LNAGEPLQWR ALLQDLSARP  180
EGPPHLRITG VHQQKEVLDQ MAYVLTQEAE KLDIAFQFNQ VVSQLEDIDV EKLRIKTGEA  240
LAISSVMQLH TLLGHDSEPK KKSPLPFKHS NGVNLHRALI NQNTLGEFLE QDKGHMANGY  300
SPSNDMASSS LLCSTTKMDG FLNALWGLSP KVMVVTEQDS NHNGTTLMER LSESLHYYAA  360
LFDCLESALP RTSLERLKVE KMLLGEEIKN IIACEGIERK ERHEKLEKWF QRFDVAGFGN  420
VPLSYYAMLQ ARRLLQSYSS EGYKIKEENG CVVIYWHDRA LFSVSSWRCR K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-37294701381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019236517.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1J6JZ680.0A0A1J6JZ68_NICAT; Scarecrow-like protein 3
STRINGXP_009761009.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29142453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]