PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00797g01001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 273aa    MW: 30854.8 Da    PI: 9.2734
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00797g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.6e-161461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+ Ed +l+d++k  G g W+  +++ g++R++k+c++rw++yl
  Niben101Scf00797g01001.1 14 KGAWTPMEDRILIDYIKVNGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                              79********************************************97 PP

2Myb_DNA-binding53.17.5e-1767111147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               rg+ T++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Niben101Scf00797g01001.1  67 RGNITPDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                               7999******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.171961IPR017930Myb domain
SuperFamilySSF466892.64E-2812108IPR009057Homeodomain-like
SMARTSM007175.5E-131363IPR001005SANT/Myb domain
PfamPF002495.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-221568IPR009057Homeodomain-like
CDDcd001675.32E-101661No hitNo description
PROSITE profilePS5129425.1762116IPR017930Myb domain
SMARTSM007171.6E-1566114IPR001005SANT/Myb domain
PfamPF002494.5E-1567110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-2569117IPR009057Homeodomain-like
CDDcd001671.14E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRKPCCFKE GLNKGAWTPM EDRILIDYIK VNGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI TPDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NMGKKLQQGI  120
APGQPNRITS SINRQHPVTQ LNKDKQENTV PQDSHYLLTD VGLGGASSSS SPCLVVRTKA  180
IRCTKVFISP PNSSSVGEAQ NIDQSHNEIS QRATTHSLLD ICENLENTTT IGDSCTKNEK  240
ERSYFPSNYS QTTLFAEETQ HNDLELWING FSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800391.11e-146PREDICTED: myb-related protein Myb4-like isoform X2
RefseqXP_016444318.11e-146PREDICTED: myb-related protein Myb4-like isoform X2
TrEMBLA0A1S3XWK01e-145A0A1S3XWK0_TOBAC; myb-related protein Myb4-like isoform X2
TrEMBLA0A1U7YEK71e-145A0A1U7YEK7_NICSY; myb-related protein Myb4-like isoform X2
STRINGXP_009602508.11e-134(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-63myb domain protein 3