PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00797g01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 273aa MW: 30854.8 Da PI: 9.2734 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 6.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l+d++k G g W+ +++ g++R++k+c++rw++yl Niben101Scf00797g01001.1 14 KGAWTPMEDRILIDYIKVNGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.5e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ Niben101Scf00797g01001.1 67 RGNITPDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7999******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.171 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.64E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.32E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.17 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-25 | 69 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.14E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MGRKPCCFKE GLNKGAWTPM EDRILIDYIK VNGEGKWRNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TPDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NMGKKLQQGI 120 APGQPNRITS SINRQHPVTQ LNKDKQENTV PQDSHYLLTD VGLGGASSSS SPCLVVRTKA 180 IRCTKVFISP PNSSSVGEAQ NIDQSHNEIS QRATTHSLLD ICENLENTTT IGDSCTKNEK 240 ERSYFPSNYS QTTLFAEETQ HNDLELWING FSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800391.1 | 1e-146 | PREDICTED: myb-related protein Myb4-like isoform X2 | ||||
Refseq | XP_016444318.1 | 1e-146 | PREDICTED: myb-related protein Myb4-like isoform X2 | ||||
TrEMBL | A0A1S3XWK0 | 1e-145 | A0A1S3XWK0_TOBAC; myb-related protein Myb4-like isoform X2 | ||||
TrEMBL | A0A1U7YEK7 | 1e-145 | A0A1U7YEK7_NICSY; myb-related protein Myb4-like isoform X2 | ||||
STRING | XP_009602508.1 | 1e-134 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 2e-63 | myb domain protein 3 |