PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00783g04014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 317aa    MW: 36122.4 Da    PI: 6.3926
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00783g04014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.48.8e-101445132
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                              +g+WT+eEd++l + ++++G g+W++ ++  g
  Niben101Scf00783g04014.1 14 KGPWTPEEDQKLTNFINKHGHGSWRALPKLAG 45
                              79************************999887 PP

2Myb_DNA-binding54.92e-174589248
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              g++T+eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l
  Niben101Scf00783g04014.1 45 GKFTQEEEQTILNLHAVLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 89
                              79*******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.94E-211185IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-111245IPR009057Homeodomain-like
SMARTSM007179.9E-171391IPR001005SANT/Myb domain
PROSITE profilePS5129421.2333993IPR017930Myb domain
PfamPF002493.6E-164589IPR001005SANT/Myb domain
CDDcd001671.30E-124689No hitNo description
Gene3DG3DSA:1.10.10.602.7E-234690IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGRSPSSDEN GLKKGPWTPE EDQKLTNFIN KHGHGSWRAL PKLAGKFTQE EEQTILNLHA  60
VLGNKWSAIA THLPGRTDNE IKNFWNTHLK KKLIQMGYDP MTHRPRTDIF NSLQHLIDLA  120
NLKELMEHQY LQNILQPYNI SFSTYIQDIK AYNLLNSISS LKDSQFLGTD NHLENHLISS  180
PNASLQAIQD LIPFSHLPEL QTSSSFQNSL NKDKVRPQNT DFITVLSHGE TLSPTSPWLP  240
SSFSPSPSHP SLTNDHRRKE NSSEVAISSC MLEERKFPDY FFQPDSERSL SNIEGASPST  300
WPDILLEDSF FQDIPKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-1812935108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016494001.10.0PREDICTED: myb-related protein 330-like
SwissprotQ9SBF32e-73MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A1S4BYM20.0A0A1S4BYM2_TOBAC; myb-related protein 330-like
STRINGXP_009606781.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.11e-70myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]