PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00783g04014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 317aa MW: 36122.4 Da PI: 6.3926 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.4 | 8.8e-10 | 14 | 45 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+eEd++l + ++++G g+W++ ++ g Niben101Scf00783g04014.1 14 KGPWTPEEDQKLTNFINKHGHGSWRALPKLAG 45 79************************999887 PP | |||||||
2 | Myb_DNA-binding | 54.9 | 2e-17 | 45 | 89 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g++T+eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l Niben101Scf00783g04014.1 45 GKFTQEEEQTILNLHAVLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 89 79*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.94E-21 | 11 | 85 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-11 | 12 | 45 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.9E-17 | 13 | 91 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.233 | 39 | 93 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.6E-16 | 45 | 89 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.30E-12 | 46 | 89 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 46 | 90 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MGRSPSSDEN GLKKGPWTPE EDQKLTNFIN KHGHGSWRAL PKLAGKFTQE EEQTILNLHA 60 VLGNKWSAIA THLPGRTDNE IKNFWNTHLK KKLIQMGYDP MTHRPRTDIF NSLQHLIDLA 120 NLKELMEHQY LQNILQPYNI SFSTYIQDIK AYNLLNSISS LKDSQFLGTD NHLENHLISS 180 PNASLQAIQD LIPFSHLPEL QTSSSFQNSL NKDKVRPQNT DFITVLSHGE TLSPTSPWLP 240 SSFSPSPSHP SLTNDHRRKE NSSEVAISSC MLEERKFPDY FFQPDSERSL SNIEGASPST 300 WPDILLEDSF FQDIPKF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-18 | 12 | 93 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016494001.1 | 0.0 | PREDICTED: myb-related protein 330-like | ||||
Swissprot | Q9SBF3 | 2e-73 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A1S4BYM2 | 0.0 | A0A1S4BYM2_TOBAC; myb-related protein 330-like | ||||
STRING | XP_009606781.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10280.1 | 1e-70 | myb domain protein 92 |
Publications ? help Back to Top | |||
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