PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00765g00008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 434aa MW: 49333.9 Da PI: 4.9462

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00765g00008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.5	2.8e-14	249	295	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er+RR ++N+++ Lr+++P++ K++ a+i++ A+eYI++L Niben101Scf00765g00008.1 249 TKHFATERQRRVHLNDKYKALRSMVPNP-----SKNDRASIVKDAIEYINEL 295 78***********************9.....7*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.218	246	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-15	249	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-14	249	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.6E-12	249	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.20E-12	249	300	No hit	No description
SMART	SM00353	1.6E-11	252	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MYVESDCFDP AASVQHEDVF GIEENTYQQD AAVVAAAALE MQFQQQLNLE MEHCYNTTHN 60 NNNNNMQELV NEHNNQGISC DQTNWEDNSN NFQHVAHDIQ NGHDQQPYLP TPDLLNMFPL 120 PRSSISFTNT NTNQASNLLT SLGLLGDIKI PATADGASNP SAIYDPSLLP LNLPPQPPLL 180 RELFHSLPHG YGLRNLRSTT SFFNGLEERD QLSGALYQDG EERSFDNGIF EFSADMNGIA 240 KNREIGKDTK HFATERQRRV HLNDKYKALR SMVPNPSKND RASIVKDAIE YINELKREVH 300 DLELMVEKKR CNRDRIKRQK TEDGGNLMDG SNAKQMDEVD QSYNGNSLRS SWLQRRSKNT 360 EVDVRVVDDE VTIKLVQQKR INCLLFASKV LDDLQLDLHH VAGGLIGDYY SFLFNSKISR 420 GTLEISLIMI QEFQ

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MYVESDCFDP AASVQHEDVF GIEENTYQQD AAVVAAAALE MQFQQQLNLE MEHCYNTTHN  60
NNNNNMQELV NEHNNQGISC DQTNWEDNSN NFQHVAHDIQ NGHDQQPYLP TPDLLNMFPL  120
PRSSISFTNT NTNQASNLLT SLGLLGDIKI PATADGASNP SAIYDPSLLP LNLPPQPPLL  180
RELFHSLPHG YGLRNLRSTT SFFNGLEERD QLSGALYQDG EERSFDNGIF EFSADMNGIA  240
KNREIGKDTK HFATERQRRV HLNDKYKALR SMVPNPSKND RASIVKDAIE YINELKREVH  300
DLELMVEKKR CNRDRIKRQK TEDGGNLMDG SNAKQMDEVD QSYNGNSLRS SWLQRRSKNT  360
EVDVRVVDDE VTIKLVQQKR INCLLFASKV LDDLQLDLHH VAGGLIGDYY SFLFNSKISR  420
GTLEISLIMI QEFQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009788149.1	0.0	PREDICTED: transcription factor bHLH91-like
Refseq	XP_016475217.1	0.0	PREDICTED: transcription factor bHLH91-like
TrEMBL	A0A1S4AEW6	0.0	A0A1S4AEW6_TOBAC; transcription factor bHLH91-like
TrEMBL	A0A1U7XMH4	0.0	A0A1U7XMH4_NICSY; transcription factor bHLH91-like
STRING	XP_009788149.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2696	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	2e-53	bHLH family protein