PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00753g03018.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 451aa    MW: 51092.1 Da    PI: 4.8334
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00753g03018.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.61.5e-091659340
                  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                              +r C+++ +k+++++C  ++ +lC++C ++ H+       H++v
  Niben101Scf00753g03018.1 16 ARACDNCIRKRARWYCPADDAFLCQNCDSSVHSAnplarrHERV 59
                              578*****************************667888888876 PP
2CCT67.92.8e-23398441144
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                               Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Niben101Scf00753g03018.1 398 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 441
                               9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-111461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.951461IPR000315B-box-type zinc finger
PfamPF006437.6E-81659IPR000315B-box-type zinc finger
CDDcd000219.64E-111761No hitNo description
PROSITE profilePS5101716.083398440IPR010402CCT domain
PfamPF062036.1E-18398440IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MVSDAKLARA MGGKTARACD NCIRKRARWY CPADDAFLCQ NCDSSVHSAN PLARRHERVR  60
LKTSSLKESS PDENFPNLES PVSVSVSVSV PSWHRGFTRK ARTPRNVRKV SKSTEEEEEE  120
EVIRKNPIHL VPEILSDENS IDDNEEQLLY RVPIFDPFVA ELCTSATRND QMENVQTAAE  180
ADSEFKPESK ETLQHDNICN GDLNRFHGML PSEMELAEFA ADVESLLGKG LDDESFDMEG  240
LGLSGGCNKE ENSMECSMVS TYKKVKIEDE GEGDEVVMDT TTTNHDIDIN GDIFEFKFDY  300
DSPTNINGGD EVGEEVMEIN GEDGVVGDAN FKEKKKILLN LDYETVLIAW ADQRSPWTNG  360
EKPELDSNDC WPDCMGNCGT IHPYGIMNGH ATIIDRGREA RVSRYREKRR TRLFSKKIRY  420
EVRKLNAEKR PRMKGRFVKR SNLVPNYPLL K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1408424RRTRLFSKKIRYEVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016507682.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A1S4D2N60.0A0A1S4D2N6_TOBAC; zinc finger protein CONSTANS-LIKE 16-like
STRINGXP_009777706.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-95B-box type zinc finger protein with CCT domain