PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00742g01035.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 500aa    MW: 57163.9 Da    PI: 10.5601
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00742g01035.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.5e-081248138
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                              +++W t+E+++l  av+++G+++W+ +a+++   Rt +
  Niben101Scf00742g01035.1 12 KMNWGTWEELILGGAVRRHGTRDWNVVASELR-ARTVY 48
                              689*****************************.88865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.6E-5866IPR009057Homeodomain-like
PROSITE profilePS500906.2721165IPR017877Myb-like domain
PfamPF002491.7E-61247IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-51263IPR009057Homeodomain-like
CDDcd001673.06E-41461No hitNo description
SuperFamilySSF473708.11E-19265371IPR001487Bromodomain
SMARTSM002975.8E-17267371IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.5E-17270391IPR001487Bromodomain
CDDcd043694.00E-15270366No hitNo description
PfamPF004392.3E-11275355IPR001487Bromodomain
PROSITE profilePS5001410.829282352IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MEGETMGVGP RKMNWGTWEE LILGGAVRRH GTRDWNVVAS ELRARTVYPY CFTPEACRTR  60
YEDLRKRYSG CNAWFEELRK RRVEELKREL ERSESSIGFL ESKIESLKDE REQSGQIDYG  120
LSRTESPALP TKSEDIESFV KDEAKDGLSA GSFTLDIRTN QSPESQVPTI PSTEVKLERS  180
ESCERDKVPS TSKVTEASNG NGGAVRKRRG KRRRKDTVWD AKEGSIEESD NVCSTSLAST  240
SHCKEALTSC EQSIRHSAVS DHRGGLSRFR NDDLMKIFTS ITQHEAAMVF RHRLDSQKRA  300
RYKKMIRRHM DIETVKSRLA SWSIKTPGEL FRDFLLLANN AMVFYSKRTR EYKAAMTLRD  360
IVTRAYRQHY KGSYYKATSS LLPLPTIGNP PGKPRSVRPR PSKDKLQAMY GNNMKDNIAG  420
KLGRQNHRPG DADPKVPLQS LLSAKKGFKR PQKTKRGSII ESVNPQTKLQ AKEPTQHNIK  480
VKEDHRIKPV TKERKRARQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16481RKRYSGCNAWFEELRKRR
2207215RRGKRRRKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019262734.10.0PREDICTED: uncharacterized protein LOC109240533
TrEMBLA0A314L9430.0A0A314L943_NICAT; Uncharacterized protein
STRINGXP_009778975.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55341924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.16e-13DNA-binding bromodomain-containing protein