PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00742g01035.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 500aa MW: 57163.9 Da PI: 10.5601 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25 | 4.5e-08 | 12 | 48 | 1 | 38 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 +++W t+E+++l av+++G+++W+ +a+++ Rt + Niben101Scf00742g01035.1 12 KMNWGTWEELILGGAVRRHGTRDWNVVASELR-ARTVY 48 689*****************************.88865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.6E-5 | 8 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.272 | 11 | 65 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 1.7E-6 | 12 | 47 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-5 | 12 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.06E-4 | 14 | 61 | No hit | No description |
SuperFamily | SSF47370 | 8.11E-19 | 265 | 371 | IPR001487 | Bromodomain |
SMART | SM00297 | 5.8E-17 | 267 | 371 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 5.5E-17 | 270 | 391 | IPR001487 | Bromodomain |
CDD | cd04369 | 4.00E-15 | 270 | 366 | No hit | No description |
Pfam | PF00439 | 2.3E-11 | 275 | 355 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 10.829 | 282 | 352 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MEGETMGVGP RKMNWGTWEE LILGGAVRRH GTRDWNVVAS ELRARTVYPY CFTPEACRTR 60 YEDLRKRYSG CNAWFEELRK RRVEELKREL ERSESSIGFL ESKIESLKDE REQSGQIDYG 120 LSRTESPALP TKSEDIESFV KDEAKDGLSA GSFTLDIRTN QSPESQVPTI PSTEVKLERS 180 ESCERDKVPS TSKVTEASNG NGGAVRKRRG KRRRKDTVWD AKEGSIEESD NVCSTSLAST 240 SHCKEALTSC EQSIRHSAVS DHRGGLSRFR NDDLMKIFTS ITQHEAAMVF RHRLDSQKRA 300 RYKKMIRRHM DIETVKSRLA SWSIKTPGEL FRDFLLLANN AMVFYSKRTR EYKAAMTLRD 360 IVTRAYRQHY KGSYYKATSS LLPLPTIGNP PGKPRSVRPR PSKDKLQAMY GNNMKDNIAG 420 KLGRQNHRPG DADPKVPLQS LLSAKKGFKR PQKTKRGSII ESVNPQTKLQ AKEPTQHNIK 480 VKEDHRIKPV TKERKRARQK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 64 | 81 | RKRYSGCNAWFEELRKRR |
2 | 207 | 215 | RRGKRRRKD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019262734.1 | 0.0 | PREDICTED: uncharacterized protein LOC109240533 | ||||
TrEMBL | A0A314L943 | 0.0 | A0A314L943_NICAT; Uncharacterized protein | ||||
STRING | XP_009778975.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5534 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60110.1 | 6e-13 | DNA-binding bromodomain-containing protein |