PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00725g05003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 354aa    MW: 40533 Da    PI: 9.0477
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00725g05003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.39.3e-411012522131
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssase 72 
                               a kkdrhski T++g+RdRR+Rls+++a++fF Lqd LGfdk+skt+eWLl+++k a+ el++               s+ss se
  Niben101Scf00725g05003.1 101 AYKKDRHSKINTARGPRDRRMRLSLDVARKFFNLQDLLGFDKASKTVEWLLTKSKSAVNELVQGinkenystanigaiSTSSTSE 185
                               679*************************************************************999999999999997777788 PP

                       TCP  73 c........eaesssssas........nsssgkaaksaakskksqksaasalnlakesrakarararertrekmr 131
                               c        +                 +++s++ +  ++k+ ++  + a+++ +akesr++arararert+ k++
  Niben101Scf00725g05003.1 186 CevvsgiyeS--------TtnidipkqQQQSNRGKVGEKKKANKIVRRAAFNPVAKESRKQARARARERTKIKKS 252
                               8544444331........23333333233334444444444444445555899999**************97765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.2E-46103251IPR005333Transcription factor, TCP
PROSITE profilePS5136934.907103161IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.477233250IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MYPSSNSCNY SLNISSSNNL FHIPSPNSMQ YEHELFQYFH DHHLLQPQQQ QQQQLLTTPD  60
HYIAADSNKD TIISSTNQDP EKVELQGNCK NKKGDNKRVV AYKKDRHSKI NTARGPRDRR  120
MRLSLDVARK FFNLQDLLGF DKASKTVEWL LTKSKSAVNE LVQGINKENY STANIGAIST  180
SSTSECEVVS GIYESTTNID IPKQQQQSNR GKVGEKKKAN KIVRRAAFNP VAKESRKQAR  240
ARARERTKIK KSFLNTGDQS MAADELKRLG CWSPFERGEE SGIQGYSTDR QVEDQHTTHH  300
EEHLLGTKEN VDDCNLVVTG NWNPYTIFSY HHNTEISHEQ QFTNFQFSGK FWEA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787900.10.0PREDICTED: transcription factor TCP12-like
RefseqXP_016434825.10.0PREDICTED: transcription factor TCP12-like
TrEMBLA0A1S3X4A50.0A0A1S3X4A5_TOBAC; transcription factor TCP12-like
TrEMBLA0A1U7XN350.0A0A1U7XN35_NICSY; transcription factor TCP12-like
STRINGXP_009787900.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.24e-26TCP family protein