PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00725g02012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 409aa    MW: 45821.6 Da    PI: 4.6714
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00725g02012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.2e-16107152352
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                                kGVr +k +g+++AeIrdps+    kr++lg+f+t + Aa+a++a + +
  Niben101Scf00725g02012.1 107 PKGVRMRK-WGKYAAEIRDPSQ---GKRIWLGTFDTVKAAAEAYDAKKAE 152
                               79****99.**********964...3*******************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-15106153IPR016177DNA-binding domain
PROSITE profilePS5103217.49106168IPR001471AP2/ERF domain
PfamPF008478.8E-10106152IPR001471AP2/ERF domain
PRINTSPR003671.9E-6107118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-19108153IPR001471AP2/ERF domain
SMARTSM003801.6E-14108162IPR001471AP2/ERF domain
CDDcd000183.94E-19108148No hitNo description
PRINTSPR003671.9E-6129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MPCLPQELFD MMSNKERVND GCVGSVRKVR IIYDDPDATE SESENDDNTC NVVRIKRIVK  60
EINVSSASLE KKDFEKCPIR SSNKSLENKN RNGLENKRVQ IKSSSLPKGV RMRKWGKYAA  120
EIRDPSQGKR IWLGTFDTVK AAAEAYDAKK AEFDRRILSE RGKNLSSPQA PPECSTACSS  180
HPTNRTSSLY SHPSPSSVLD VPNSSAAAAV ECIDIPMKDK NPVPVLEVEQ PAVECIDILD  240
FNPKFEDQML YKDPLIEQGT ISNSLAEMTE FNITKKTKAR QPTIKICQKS TKGIEDRHLN  300
CTDQSITPPS ISAELNMMNF EETAVSGNNL KLLGFDENAL FGKDFSQTFD PYTDFVGLDS  360
NFLCCDGLEE FVYGMNEDFR DNVGANSPKL DDVELRWLDE VLIEDQTVL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244158.10.0PREDICTED: uncharacterized protein LOC109224066
TrEMBLA0A1J6IKV80.0A0A1J6IKV8_NICAT; Ethylene-responsive transcription factor crf3
STRINGXP_009791614.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127181519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-17cytokinin response factor 4