PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00725g01008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 415aa    MW: 46941.2 Da    PI: 4.6449
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00725g01008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.92.4e-091760340
                  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                              +r C+ + +k++++fC  ++ +lC++C ++ H+       H++v
  Niben101Scf00725g01008.1 17 ARACDSCLSKRARWFCPADDAFLCQSCDVSVHSAnqlatrHERV 60
                              578*****************************667888888876 PP
2CCT67.63.3e-23357400144
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                               Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Niben101Scf00725g01008.1 357 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRLKGRFVKRT 400
                               9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-111562IPR000315B-box-type zinc finger
PROSITE profilePS5011910.9641562IPR000315B-box-type zinc finger
PfamPF006431.0E-71760IPR000315B-box-type zinc finger
CDDcd000211.03E-111862No hitNo description
PfamPF062037.9E-18357399IPR010402CCT domain
PROSITE profilePS5101716.043357399IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MMTSESKKAN AIGGKTARAC DSCLSKRARW FCPADDAFLC QSCDVSVHSA NQLATRHERV  60
RLETSSNKST DTKFVDQTVS QPSWHQGFTR KARTPRNGRN KSIQIGQQKK DEENMVPEMG  120
SEENSPDENE FENEEQLLYR VPVFDPFEAE LCTDPNEVVD ETTTINDLDI LLNGEDAYDD  180
IGIPEFLSSE IELAEFAADV ESLLGKEFVV GEEEDEQSRL INGSVEDNKA IKIEVEDEEM  240
RAVVACHLDP ELNMAREALN WDFEYEETVE QKVNMGAATE FVPSMECGGS KADAKSRLLL  300
RLNYEEVISA WPNQSSPWTD GIRPHFSPDD FLETCIGEGG GYQPYGGGNV RGGDGGREAR  360
VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RLKGRFVKRT TPFSAPGFPY LMNKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1367383RRTRLFSKKIRYEVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603861.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A1S3X5190.0A0A1S3X519_TOBAC; zinc finger protein CONSTANS-LIKE 16-like
STRINGXP_009603861.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.19e-79B-box type zinc finger protein with CCT domain