PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00712g14003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 902aa MW: 100917 Da PI: 5.9532

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00712g14003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.3	1.7e-29	582	633	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+le l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Niben101Scf00712g14003.1 582 AEKTITLEILQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 633 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.575	570	653	IPR003035	RWP-RK domain
Pfam	PF02042	9.5E-26	585	633	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.89E-23	797	885	No hit	No description
PROSITE profile	PS51745	24.755	801	885	IPR000270	PB1 domain
SMART	SM00666	1.0E-23	801	884	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	8.6E-22	802	880	No hit	No description
Pfam	PF00564	1.7E-18	803	882	IPR000270	PB1 domain
CDD	cd06407	2.57E-39	803	884	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence Send to blast
MDESVIPSNP LLTNQSDYFM DLDYMDGLLL EGCWLETTDG NEFLQNSPAT FNAPFDSSFM 60 WPNTIDTNNV EFNGIPSKDS QQEKQIQPFG ENVNNAMCTS GQSEGLSVEA PELNRRWWFG 120 PKASSSVMDR LIWALGHIRD CSRDKDILLQ LWVPINRDGR HVLSTTDQPF LLDLNCPRLA 180 NYRQVSVNYQ FPANEDSKEI VGLPGRVFAD KVPEWSPDVR FFRSEEYPRV EHAQQYDVRG 240 TLAVPVFEQG SRNCLGVIEV VMTTQKIKYR TELESVCEAL KAVNLRTSEV STTQNAKVCD 300 LSYQAALPEI LEVLKSACET HGLPLAQTWV PCVQQGKGGC RHSEENLIHC VSTEDSACYV 360 ADPHIRGFHE ACSEHHLLKG QGVVGRAFMT NQPCFSADLT SYSKTEYPLS HHAQMFGLQA 420 AVAIRLRSIS TGSCDFVLEF FLPSDCRNPE EHRKMLTSLS IIIQNVCRTL RVVTDKELQE 480 EVVSIGEAAN PSFIRSNKEQ TETSQERTSW TSCDAEFQES STVVSAFQDE KPDEMLRKEP 540 VEFRHHNDSG YGMDFSLNEN RCASGEGVSR NGKKGDRRRT KAEKTITLEI LQQYFAGSLK 600 DAAKSIGVCP TTLKRICRQH GIKRWPSRKI KKVGHSLQKI QRVIDSVQGA SGSLQIESFY 660 SNFPELASPN VSRLSPFADS KSNEHPKGLN TQQGCVMSPH AAASKSPSSS CSRSSSSSQC 720 CSSGTKPQSS PLSIAGNDDP IVQEESVDNA VKRVKSEPEL HLSSEALKIL PRSQSHACVA 780 ENPKSESLLV KKGPLRSQEE APRVKVTHGE EKIRFRMQNS WRYNELLREI TRRFGIDDPS 840 GLQLKYMDDD SEWVLLTCDA DLEECIDVCM SSQNQMIKLI LVRDSQHHIG SSFGSNSLIL 900 VQ

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence Send to blast

MDESVIPSNP LLTNQSDYFM DLDYMDGLLL EGCWLETTDG NEFLQNSPAT FNAPFDSSFM  60
WPNTIDTNNV EFNGIPSKDS QQEKQIQPFG ENVNNAMCTS GQSEGLSVEA PELNRRWWFG  120
PKASSSVMDR LIWALGHIRD CSRDKDILLQ LWVPINRDGR HVLSTTDQPF LLDLNCPRLA  180
NYRQVSVNYQ FPANEDSKEI VGLPGRVFAD KVPEWSPDVR FFRSEEYPRV EHAQQYDVRG  240
TLAVPVFEQG SRNCLGVIEV VMTTQKIKYR TELESVCEAL KAVNLRTSEV STTQNAKVCD  300
LSYQAALPEI LEVLKSACET HGLPLAQTWV PCVQQGKGGC RHSEENLIHC VSTEDSACYV  360
ADPHIRGFHE ACSEHHLLKG QGVVGRAFMT NQPCFSADLT SYSKTEYPLS HHAQMFGLQA  420
AVAIRLRSIS TGSCDFVLEF FLPSDCRNPE EHRKMLTSLS IIIQNVCRTL RVVTDKELQE  480
EVVSIGEAAN PSFIRSNKEQ TETSQERTSW TSCDAEFQES STVVSAFQDE KPDEMLRKEP  540
VEFRHHNDSG YGMDFSLNEN RCASGEGVSR NGKKGDRRRT KAEKTITLEI LQQYFAGSLK  600
DAAKSIGVCP TTLKRICRQH GIKRWPSRKI KKVGHSLQKI QRVIDSVQGA SGSLQIESFY  660
SNFPELASPN VSRLSPFADS KSNEHPKGLN TQQGCVMSPH AAASKSPSSS CSRSSSSSQC  720
CSSGTKPQSS PLSIAGNDDP IVQEESVDNA VKRVKSEPEL HLSSEALKIL PRSQSHACVA  780
ENPKSESLLV KKGPLRSQEE APRVKVTHGE EKIRFRMQNS WRYNELLREI TRRFGIDDPS  840
GLQLKYMDDD SEWVLLTCDA DLEECIDVCM SSQNQMIKLI LVRDSQHHIG SSFGSNSLIL  900
VQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019244880.1	0.0	PREDICTED: protein NLP4-like
Refseq	XP_019244882.1	0.0	PREDICTED: protein NLP4-like
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A1J6IGZ9	0.0	A0A1J6IGZ9_NICAT; Protein nlp4
STRING	XP_009759077.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein