PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00705g05011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ZF-HD | ||||||||
Protein Properties | Length: 222aa MW: 25210.5 Da PI: 7.9193 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 40.6 | 5.9e-13 | 77 | 104 | 33 | 60 |
ZF-HD_dimer 33 geegtaaalkCaACgCHRnFHRreveee 60 geegt++al C+AC+CHRnFHR+e e e Niben101Scf00705g05011.1 77 GEEGTIEALICSACNCHRNFHRKEIEGE 104 788*********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.9E-11 | 74 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-9 | 76 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.11E-11 | 159 | 210 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 8.0E-20 | 160 | 205 | IPR006455 | Homeodomain, ZF-HD class |
Gene3D | G3DSA:1.10.10.60 | 2.7E-19 | 161 | 211 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MEIPSQEEEM PMPINSSYVG GGGHAHGHII HHDRTPVPNN TNHIIPSSVA NSINGPPIEA 60 TPVSADHHVP YKKIVSGEEG TIEALICSAC NCHRNFHRKE IEGEQQLLQL QPPPSSCDYY 120 SLNRGRNFHR KEIEGEQQLL QLQPPPSSCD YYNLNRGGQK KEKMFNFAEK VGWKIQKQEE 180 TVVQQFCQEL GIKRRVLKVW MHNNKHNLAK KNSNITIPQN QV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 1e-16 | 158 | 207 | 26 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019225555.1 | 3e-99 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Swissprot | O64722 | 2e-37 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A314KTD2 | 7e-98 | A0A314KTD2_NICAT; Zinc-finger homeodomain protein 4 | ||||
STRING | XP_009613099.1 | 9e-97 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5154 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50890.1 | 5e-28 | homeobox protein 28 |
Publications ? help Back to Top | |||
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