PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00690g03007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 343aa    MW: 37591.9 Da    PI: 6.4078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00690g03007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-09187234455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR++iN ++  L+el+P +    +k    a++L + +++++sLq
  Niben101Scf00690g03007.1 187 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQSLQ 234
                               8*************************9....89999***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-15181252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-9181238No hitNo description
PROSITE profilePS5088814.634183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-15186251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-7187234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-9189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MESTQVRSAS CGGKAGETET GFHQISGECQ SIIMPVPTEA PGNSFTALLE LPPNQALDLL  60
VHSDKMGSAA KLSLQETHNK TYYSSPLIDR ASAGEFSVFA AGISPENGSF PSNSQFVKLE  120
PVDSDSNRNS SPEFSNPTFD QKTTKRKERQ KKGKEISSKK SKRTANDTSE KLPYVHVRAA  180
RGQATDSHSL AERARREKIN ARMKLLQELV PGCNKISGTA MVLDEIINHV QSLQRQVEFL  240
SMRLAAVNSR VDFNLDSLFA AESGSAVDCN FAGIVAPSIW PEGQSSGNRN QYQQLLQIDG  300
FNQSVWVREE DNSSFITPEN SLLTYDSSAN SASLHQNQLK MEL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019243029.10.0PREDICTED: transcription factor bHLH48-like
TrEMBLA0A1J6IHG50.0A0A1J6IHG5_NICAT; Transcription factor bhlh48
STRINGXP_009780303.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40292342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-77bHLH family protein