PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00687g04018.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 944aa MW: 106156 Da PI: 5.7524

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00687g04018.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.9	4.5e-41	112	189	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ak+yhrrhkvCe+hsk++ +lvs+l+qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+qa Niben101Scf00687g04018.1 112 MCQVDDCGVDLSNAKDYHRRHKVCEMHSKSSRALVSNLMQRFCQQCSRFHALEEFDEGKRSCRRRLAGHNKRRRKTQA 189 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.1E-32	106	174	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.214	110	187	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.66E-38	111	192	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.7E-30	113	186	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.49E-6	719	832	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.8E-4	721	832	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.13E-6	722	832	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 944 aa Download sequence Send to blast
MEARTGGEMQ LFNKSLEWDP NDWKWDGDLF IARPKIPSSN YQFFPLETGN SSSSCSDEVI 60 IGEFEKRSRR RENDENVEYD SASLSLKLGE QGGHPREFGK RTKQNTTSNR AMCQVDDCGV 120 DLSNAKDYHR RHKVCEMHSK SSRALVSNLM QRFCQQCSRF HALEEFDEGK RSCRRRLAGH 180 NKRRRKTQAD SAYNNQTLND VQASDQDLLC HLLRSLASQG SPYGDNNLSG LLQASSNLLN 240 NRSPSRNSDI VSLVSNGSRR PPIPKEPHFA TTLAAQVPQI SSDVHDVRLE NVQTESCQSP 300 GTSFPIQNSS PAYAQARESS AGRRKLINFD LNDMYDGSDD SRENLERLPM PADRGIGPLE 360 CRSWLQQDSQ QSSPPSRNSD SASTQSPSSS SSDAQSRTDR IVFKLFGKDP SDFPYFLRAQ 420 ILDWLSHSPS EIESYIRPGC IVLTVYLRLP ESAWEELCCD LSSTLSRLLD VPGDSFWRKG 480 WIYIRVQNQI AFVDDGELLL DVSLPFETIE HTSILSVKPI AVPVSDRAQF IVKGYNLTKP 540 STRLLCALEG NYLVTEANDE VEHVDGVKKN AELQSINLTC SIPAVSGRGF IEVEDHGLSN 600 GFFPIIIAEE DVCSEIRMLE SAIELTTADY VNGLTNNVEV KSQAMDFIHE MVWLLHRNNL 660 KARLGSNAIL FPLKRFKWLM EFSIDHDWCA VVRKLLNLLL GGTVGGEENS FLKVSLSEMG 720 LLHKAVRRNS RPLVELLLTY TPEEVADELC SEYQSLVAVN GKFIFRPDSV GPAGLTPLHV 780 AAGIDGYEDV LDSLTDDPGM VAIEAWKNTR DSVGFTPEDY ARLRGHYSYI HLVQRKINRV 840 TAKYIVVDIP YNLSDGNSNQ KDECATDSFE VSQTERRLIQ PCGMCDRKLV YGRHSRSLLY 900 RPVMFSMVAL AAVCVCVALL FKSSPEVLYI FRPFRWEMLD YGSS

Sequence ? help Back to Top

Protein Sequence Length: 944 aa Download sequence Send to blast

MEARTGGEMQ LFNKSLEWDP NDWKWDGDLF IARPKIPSSN YQFFPLETGN SSSSCSDEVI  60
IGEFEKRSRR RENDENVEYD SASLSLKLGE QGGHPREFGK RTKQNTTSNR AMCQVDDCGV  120
DLSNAKDYHR RHKVCEMHSK SSRALVSNLM QRFCQQCSRF HALEEFDEGK RSCRRRLAGH  180
NKRRRKTQAD SAYNNQTLND VQASDQDLLC HLLRSLASQG SPYGDNNLSG LLQASSNLLN  240
NRSPSRNSDI VSLVSNGSRR PPIPKEPHFA TTLAAQVPQI SSDVHDVRLE NVQTESCQSP  300
GTSFPIQNSS PAYAQARESS AGRRKLINFD LNDMYDGSDD SRENLERLPM PADRGIGPLE  360
CRSWLQQDSQ QSSPPSRNSD SASTQSPSSS SSDAQSRTDR IVFKLFGKDP SDFPYFLRAQ  420
ILDWLSHSPS EIESYIRPGC IVLTVYLRLP ESAWEELCCD LSSTLSRLLD VPGDSFWRKG  480
WIYIRVQNQI AFVDDGELLL DVSLPFETIE HTSILSVKPI AVPVSDRAQF IVKGYNLTKP  540
STRLLCALEG NYLVTEANDE VEHVDGVKKN AELQSINLTC SIPAVSGRGF IEVEDHGLSN  600
GFFPIIIAEE DVCSEIRMLE SAIELTTADY VNGLTNNVEV KSQAMDFIHE MVWLLHRNNL  660
KARLGSNAIL FPLKRFKWLM EFSIDHDWCA VVRKLLNLLL GGTVGGEENS FLKVSLSEMG  720
LLHKAVRRNS RPLVELLLTY TPEEVADELC SEYQSLVAVN GKFIFRPDSV GPAGLTPLHV  780
AAGIDGYEDV LDSLTDDPGM VAIEAWKNTR DSVGFTPEDY ARLRGHYSYI HLVQRKINRV  840
TAKYIVVDIP YNLSDGNSNQ KDECATDSFE VSQTERRLIQ PCGMCDRKLV YGRHSRSLLY  900
RPVMFSMVAL AAVCVCVALL FKSSPEVLYI FRPFRWEMLD YGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-31	112	186	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016507693.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A1S4D2Y7	0.0	A0A1S4D2Y7_TOBAC; squamosa promoter-binding-like protein 1
STRING	XP_009773067.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]