PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00611g11027.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 277aa MW: 30777.8 Da PI: 9.4791

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00611g11027.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.3	1.5e-12	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+e l +v+++G g Wk I r R+ ++k++w+++ Niben101Scf00611g11027.1 5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEfnhllYSRSNIDLKDKWRNL 56 79*********************************9**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.202	1	61	IPR017930	Myb domain
SMART	SM00717	1.5E-8	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.8E-14	5	56	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.47E-14	6	66	IPR009057	Homeodomain-like
CDD	cd11660	2.20E-20	6	57	No hit	No description
Pfam	PF13921	1.0E-8	8	63	No hit	No description
SMART	SM00526	1.1E-15	115	180	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	1.22E-14	115	197	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.0E-13	117	191	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	23.555	117	185	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	5.8E-10	120	178	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LYSRSNIDLK DKWRNLNVSA 60 SGQGPRDKSR TQKVKADAPA APLLITQGPV SSTPVLQDAA ADTVMEDSSK CALDGKTASK 120 YNQMIYDALS SLKEPNGSDT STIVNFIEQR HEVPQNFRRL LSSRLRRLVQ QDKLEKIENC 180 YRIKKEVLER TKTATAKQKH VGPRQFPSSA YLGDTVEEAA KTAVYKVAEA DNKSFVAAEA 240 AKEEARVSKM AEDQESLLLL AKDIFDRCSQ GGIVLMA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009757029.1	0.0	PREDICTED: telomere repeat-binding factor 4-like
Refseq	XP_016464151.1	0.0	PREDICTED: telomere repeat-binding factor 4-like
Refseq	XP_019249157.1	0.0	PREDICTED: telomere repeat-binding factor 4
Swissprot	Q6WLH4	2e-68	SMH3_MAIZE; Single myb histone 3
TrEMBL	A0A1J6I4E4	0.0	A0A1J6I4E4_NICAT; Telomere repeat-binding factor 4
TrEMBL	A0A1S3ZIH5	0.0	A0A1S3ZIH5_TOBAC; telomere repeat-binding factor 4-like
TrEMBL	A0A1U7V475	0.0	A0A1U7V475_NICSY; telomere repeat-binding factor 4-like
STRING	XP_009757029.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2504	23	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17520.1	1e-66	MYB_related family protein

Publications ? help Back to Top
Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]