PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00603g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 152aa    MW: 17571.7 Da    PI: 8.6201
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00603g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.6e-183079255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               y GVr+++ +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+ +l+g
  Niben101Scf00603g02001.1 30 VYCGVRRRR-WGKWVSEIREPRK---QSRIWLGSFSSPEMAARAYDVAAYCLKG 79
                              677***777.**********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.3E-122979IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-213089IPR016177DNA-binding domain
SMARTSM003805.3E-323093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-303088IPR001471AP2/ERF domain
PROSITE profilePS5103222.5893087IPR001471AP2/ERF domain
CDDcd000181.75E-283188No hitNo description
PRINTSPR003672.3E-83142IPR001471AP2/ERF domain
PRINTSPR003672.3E-85369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEKRQPPPSP AENRRKIDDQ RGRRSTRHPV YCGVRRRRWG KWVSEIREPR KQSRIWLGSF  60
SSPEMAARAY DVAAYCLKGC NAQLNFPDEI EQLPRPITST ARDIQAAAAM AANNAIIMKK  120
KNQENCGSDD FWEEIELPDL KDGNDYNLYS EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-181989274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019228064.16e-90PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI23e-50ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A314KP901e-88A0A314KP90_NICAT; Ethylene-responsive transcription factor erf023
STRINGXP_009790153.11e-79(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138741314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.11e-46ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]