PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00596g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 322aa    MW: 35858.5 Da    PI: 9.3698
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00596g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.51.8e-104183345
                              XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                              + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Niben101Scf00596g01005.1 41 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQEL 83
                              67889*************************9888888777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-83786No hitNo description
SMARTSM003387.0E-939102IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4614185IPR004827Basic-leucine zipper domain
PfamPF001701.4E-74284IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.56E-74386No hitNo description
PROSITE patternPS0003604661IPR004827Basic-leucine zipper domain
PfamPF141441.7E-29126198IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MMAEISPSTS TDADTDDKNL RLMNSQPVAS VTSDGSDKPR DQKTLRRLAQ NREAARKSRL  60
RKKAYVQQLE SSRMKLTQLE QELQRARQQG IFISSSGDQS QSKTGNGALA FDVEYARWLE  120
EHNRRITELR GAVSSHSGDG ELRIIVDGIL AHYDDIFRIK GDAAKADVFH ILSGMWKTPA  180
ERCFLWLGGF RSSELLKLEP LTEQQLLAIN NLQESSQQAE DALSQGMEAL QQSLAETLAG  240
SLGPSGSSGN VANYMGQMAM AMGKLGTLEG FIRQADNLRQ QTLQQMHRVL TTRQSARALL  300
AISDYFSRLR ALSSLWLARP RE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803516.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
RefseqXP_009803517.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
SwissprotQ415581e-179HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A1U7YHD80.0A0A1U7YHD8_NICSY; transcription factor HBP-1b(C38)-like isoform X1
STRINGXP_009803516.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-145bZIP family protein