PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00578g04002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 380aa MW: 42149.2 Da PI: 5.2309

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00578g04002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15	4.5e-05	314	350	11	52
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 R +++ +++ L++l+ + +K + a++L +A+eYIk Niben101Scf00578g04002.1 314 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIK 350 5778999********998.....8*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.954	303	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.75E-5	313	350	No hit	No description
SuperFamily	SSF47459	7.46E-8	313	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-6	317	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MAEEFQLRNR NWWDNNTSIS RNSAPTAAST TVSNMSSNYS NWQNTETQVD IKPRTFLDSG 60 SVLSESSGGG GSGGRGGSGG GGGGILCAEN NFQVMGLGLT SQPHDWNQSL LRGEKAESGF 120 SSILQQEDLN SNTNNYQLEA SNSQQDNHWN RQEIYSGNSE DSSSVDDYKQ MNFVYNINPS 180 NNYGLSQESA AHDHPVMHSS TTSSWSKFPQ FLRTSPPEQQ PLPPSLSPPP PHSQLHFSNN 240 TPFWNASAAS MNDVPSTLFP SNLHRQLPIP IVDEKAKNMG EVRDINKMSK KTSSETSNKR 300 PWDETPSPSP AFKVRKEKMG DRITALQQLV SPFGKTDTAS VLSEAIEYIK VVINPRMQED 360 KTKILEVEDY VWYQFQALSQ

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MAEEFQLRNR NWWDNNTSIS RNSAPTAAST TVSNMSSNYS NWQNTETQVD IKPRTFLDSG  60
SVLSESSGGG GSGGRGGSGG GGGGILCAEN NFQVMGLGLT SQPHDWNQSL LRGEKAESGF  120
SSILQQEDLN SNTNNYQLEA SNSQQDNHWN RQEIYSGNSE DSSSVDDYKQ MNFVYNINPS  180
NNYGLSQESA AHDHPVMHSS TTSSWSKFPQ FLRTSPPEQQ PLPPSLSPPP PHSQLHFSNN  240
TPFWNASAAS MNDVPSTLFP SNLHRQLPIP IVDEKAKNMG EVRDINKMSK KTSSETSNKR  300
PWDETPSPSP AFKVRKEKMG DRITALQQLV SPFGKTDTAS VLSEAIEYIK VVINPRMQED  360
KTKILEVEDY VWYQFQALSQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	80	GGRGGSGGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016493741.1	0.0	PREDICTED: transcription factor bHLH123-like
TrEMBL	A0A1S4BXW1	0.0	A0A1S4BXW1_TOBAC; transcription factor bHLH123-like
STRING	XP_009790944.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-26	bHLH family protein