PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00577g12010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 447aa    MW: 50572.3 Da    PI: 4.9195
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00577g12010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.33.5e-091659340
                  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                              +r C+++ +k+++++C  ++ +lC++C ++ H+       H++v
  Niben101Scf00577g12010.1 16 ARACDHCIRKRARWYCPADDAFLCQNCDSSVHSAnplarrHERV 59
                              578*****************************667888888876 PP
2CCT67.92.8e-23394437144
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                               Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Niben101Scf00577g12010.1 394 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 437
                               9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.0E-101461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.851461IPR000315B-box-type zinc finger
PfamPF006432.2E-71659IPR000315B-box-type zinc finger
CDDcd000219.85E-111761No hitNo description
PfamPF062036.0E-18394436IPR010402CCT domain
PROSITE profilePS5101716.083394436IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MVSGTKLASA MGGKTARACD HCIRKRARWY CPADDAFLCQ NCDSSVHSAN PLARRHERVR  60
LKTSSLKESS PDENFPNLES PVSVSLPSWH RGFTRKARTP RNGRKASKST EDDEEEEVIR  120
KNPTHLVPEI LSDENSLDEN EEQLLYRVPI FDPFVAELCT SATKSDQMEK VQTTTEVDSE  180
FKLESKETLQ HDNIHNGDLN KFHGTLPSEM ELAEFAADVE SLLGKGLDDE SFDMEGLGLL  240
GGCNKEENSV ECSMVSTYEK VKIEDEGEGD EVVMDTTTNS HDTDINGDTF EFKFDYDSPI  300
NINGEDEVGE IVMKINGEDG VVGDGNYNEK KKILLNLDYE GVLTAWADQR SPWTNGERPE  360
LDSNDCWPDC MGNCGTIHPY GIMNGHATVI DRGREARVSR YREKRRTRLF SKKIRYEVRK  420
LNAEKRPRMK GRFVKRSNLV PNYPLLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1404420RRTRLFSKKIRYEVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238214.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A1J6JVW40.0A0A1J6JVW4_NICAT; Zinc finger protein constans-like 16
STRINGXP_009627333.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.16e-99B-box type zinc finger protein with CCT domain