PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00577g11004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 328aa    MW: 36806.9 Da    PI: 4.4282
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00577g11004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-18112159253
                       AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                               +y+GVr++k +g+W+AeIrd +     + +r++lg++ taeeA  a++  r+++
  Niben101Scf00577g11004.1 112 KYRGVRQRK-WGKWAAEIRDpF-----KgRRVWLGTYNTAEEASLAYETKRLEF 159
                               8*******9.**********55.....45*******************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-19112173IPR001471AP2/ERF domain
PfamPF008474.2E-12112159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-22112166IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-17112165IPR016177DNA-binding domain
CDDcd000183.83E-24112152No hitNo description
PROSITE profilePS5103220.363112169IPR001471AP2/ERF domain
PRINTSPR003674.1E-10113124IPR001471AP2/ERF domain
PRINTSPR003674.1E-10135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MFEPQKQPQK SKNRVETGQP MRKIRIVCND PDATDSSEDE RVNDIKPTLK RFVREINLPI  60
GNISSKKVKV KIPVETTEIS CQDSNNGEKN PRKNRVLAKT LSSNQQRLSP GKYRGVRQRK  120
WGKWAAEIRD PFKGRRVWLG TYNTAEEASL AYETKRLEFD SMAKNINNSS SNVSEKSSNN  180
EENSAESLVS HASHTSPASV LEMDWLTSAS EVNDIKHDDE KAKVELGLME DSLSLAEIGA  240
GMEFDIEMDL FFAGSDDFGQ NLDDFVVNDF EDLPIYGLEG DEQLPTGLPD FDFDFDFDGY  300
NESCAWMDDT TAAPLMNGTT PLNIALCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-15113153344ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799139.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
RefseqXP_009799140.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
RefseqXP_016479524.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
TrEMBLA0A1S4AS650.0A0A1S4AS65_TOBAC; ethylene-responsive transcription factor ERF118-like
TrEMBLA0A1U7YIQ00.0A0A1U7YIQ0_NICSY; ethylene-responsive transcription factor ERF118-like
STRINGXP_009799139.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29572351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-28ERF family protein