PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00551g04011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 267aa    MW: 30276.7 Da    PI: 5.3666
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00551g04011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              rg+W++eEd  l+++ ++ G+g +W + +++ g++R++k+c++rw++yl
  Niben101Scf00551g04011.1 14 RGPWSPEEDNTLKNYLEKNGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                              89*********************************************97 PP
2Myb_DNA-binding45.51.7e-1469111246
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               g +T+eEd +++ +  q G++ W+ Ia+ ++ gRt++++k++w++
  Niben101Scf00551g04011.1  69 GGFTEEEDNIILTLYSQIGSR-WSVIAANLQ-GRTDNDVKNHWNT 111
                               569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.58962IPR017930Myb domain
SuperFamilySSF466893.36E-2711109IPR009057Homeodomain-like
SMARTSM007177.8E-111364IPR001005SANT/Myb domain
PfamPF002499.6E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-231569IPR009057Homeodomain-like
CDDcd001674.40E-81662No hitNo description
PROSITE profilePS5129422.95163117IPR017930Myb domain
SMARTSM007175.2E-1367115IPR001005SANT/Myb domain
PfamPF002497.0E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2370117IPR009057Homeodomain-like
CDDcd001674.36E-1071111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGRAPCCDKS RVKRGPWSPE EDNTLKNYLE KNGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIL TLYSQIGSRW SVIAANLQGR TDNDVKNHWN TKLKKKLLAA  120
KNYSNLSSCS YNSNDLNNNF SRNYSIMDSN TFTSLMDPNL HNPNLLVPEI LVAESDQLFP  180
IQGLMEIQEN GAIQSVQDQE DGNIMDFSSG ISSSYYYDLL NGFDFQEKFI GAHDPNYSSS  240
FSNYSTLVQL QANNIPDIDQ TFRGFEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474887.11e-168PREDICTED: transcription factor RAX2-like
TrEMBLA0A1S4ADY41e-167A0A1S4ADY4_TOBAC; transcription factor RAX2-like
STRINGXP_009799606.11e-165(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.18e-69MYB family protein