PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00546g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 299aa MW: 33461.9 Da PI: 7.1592 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50 | 7.4e-16 | 116 | 167 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ + +g Niben101Scf00546g00002.1 116 SRYRGVARHHHNGRWEARIGKvF---G-NKYLYLGTYATQEEAAMAYDMAAIEHRG 167 79****99**********99966...3.6***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 0.0031 | 39 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-6 | 52 | 83 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 9.545 | 53 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-6 | 54 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.48E-25 | 116 | 177 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-18 | 116 | 177 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.6E-12 | 116 | 167 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-26 | 117 | 181 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.952 | 117 | 175 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-18 | 117 | 176 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MAKTSKSNQK NTSHSKNSDK NNSNSGGSGD HALTKGKRKR KAVVPRDSPP QRAYSDEEAA 60 AHAYDLAALK YWGQDTILNF PISTYEKELK EMEDQSREEY IGSLRRKSSG FSRGVSRYRG 120 VARHHHNGRW EARIGKVFGN KYLYLGTYAT QEEAAMAYDM AAIEHRGPNA VTNFDLSRYI 180 KCNPKLKSIP NSTDLNPIPN TKEEIDSNFI HQQHEQQESS NSAGITVPPP HAVGVTAASS 240 VVDCPGTPPE PDRPRRSFPD DIQAYFNCHD SSSFVEEHDI IFGDFDSFVL PMFAYELNT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019248140.1 | 1e-179 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 4e-82 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A1J6IQF4 | 1e-178 | A0A1J6IQF4_NICAT; Ap2-like ethylene-responsive transcription factor | ||||
STRING | XP_009774530.1 | 1e-172 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1815 | 24 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 2e-79 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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