PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00539g01011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 845aa    MW: 96600.4 Da    PI: 7.0086
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00539g01011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.2e-14853248
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Niben101Scf00539g01011.1  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                              78*****************************.************986 PP
2Myb_DNA-binding30.86.6e-1063105348
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                WT eEde+l+++ k++++  W+t+a  +g  Rt+ qc +r+ k+l
  Niben101Scf00539g01011.1  63 EWTREEDEKLLHLAKLMPTQ-WRTVAPIVG--RTPSQCLERYEKLL 105
                               6*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-17555IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF002499.8E-12853IPR001005SANT/Myb domain
CDDcd001671.51E-111053No hitNo description
SuperFamilySSF466891.62E-1833109IPR009057Homeodomain-like
CDDcd116592.11E-2755108No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1156106IPR009057Homeodomain-like
PROSITE profilePS5129414.39458109IPR017930Myb domain
SMARTSM007171.3E-1060107IPR001005SANT/Myb domain
PfamPF139211.1E-864112No hitNo description
PfamPF118319.4E-59408650IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKA  60
QTEWTREEDE KLLHLAKLMP TQWRTVAPIV GRTPSQCLER YEKLLDAACA KDENYDPNDD  120
PRKLKPGEID PNPESKPARP DPVDMDEDEK EMLSEARARL ANTRGKKAKR KAREKQLEEA  180
RRLASLQKRR ELKAAGIDAR QRKRKRRGID YNAEIPFEKK PPPGFHDVAE EDRPIEQPKF  240
PTTIEELEGE RRVDKEARLR KQDIARNKIA ERQDAPTAIL HANKLNDPEA VRKRSKLNLP  300
APQIPDHELE AIAKIGIASD LLGGDELSEG NAATRALLAN YAQTPQHAMT PMRTPQRTPS  360
TKQDAIMMEA ENQRRLTQSQ TPLLGGDNPM LHPSDFSGVT PKKREVQTPN PLLTPSATPG  420
ATGLTPRIGM TPSRDSYGMT PKGTPMRDEL RINEEMDMHN NAKLGQFNSK KELLSGLKSL  480
PQPKNEYQIV VQQPHEENEE PPEENIEEDM SDRIAREKAE EEARQQALLR KRSKVLQREL  540
PRPPIASLEL IRSSLMRADE DKSSFVPPTL IEQADEMIRK ELLSLLEHDN SKYPLDEKPE  600
KEKKKGVTRK VLAEPAIEDF EEDELKEADG LIKDEAQFVR VAMGHEGESL DEFVEAHKTT  660
LNDIMYFPTR NAYGLSSVAG NMEKLAALQY EFENVKKKMD DDTKKATRLE QKIKVLTNGY  720
QMRAGKLWSQ IEATFKQMDT AGTELECFRA LQKQEQLAAS HRINNLWEEV QKQKELERTL  780
QKRYGDLIAD KEKMQHLMDE FRIQAQMQEE IAAKNRALEL AKAEMEEXQN TSSNSGRNCS  840
KESCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027953799Cell division cycle 5-like protein
5xjc_L0.027953799Cell division cycle 5-like protein
5yzg_L0.027953799Cell division cycle 5-like protein
5z56_L0.027953799Cell division cycle 5-like protein
5z57_L0.027953799Cell division cycle 5-like protein
5z58_L0.027953799Cell division cycle 5-like protein
6ff4_L0.027953799Cell division cycle 5-like protein
6ff7_L0.027953799Cell division cycle 5-like protein
6icz_L0.027953799Cell division cycle 5-like protein
6id0_L0.027953799Cell division cycle 5-like protein
6id1_L0.027953799Cell division cycle 5-like protein
6qdv_O0.027953799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187206KRRELKAAGIDARQRKRKRR
2200206QRKRKRR
3201206RKRKRR
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631530.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A1U7YGI30.0A0A1U7YGI3_NICSY; cell division cycle 5-like protein
STRINGXP_009631530.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61392431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]