PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00505g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 476aa    MW: 50036.4 Da    PI: 8.4492
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00505g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.5e-123458327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                              ++ C +++rtG+C yG+rC+F+H+p
  Niben101Scf00505g01005.1 34 EADCIYYLRTGFCGYGSRCRFNHPP 58
                              689********************97 PP
2zf-CCCH37.15.4e-1284108327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               ++ C++++rtG Ck+G++Ck++H++
  Niben101Scf00505g01005.1  84 QPVCQYYMRTGMCKFGASCKYHHPR 108
                               689********************96 PP
3zf-CCCH361.2e-11129154227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++C f+++tG+Ck+G +CkF+H++
  Niben101Scf00505g01005.1 129 GEKECLFYMKTGQCKFGITCKFHHPQ 154
                               7899********************97 PP
4zf-CCCH35.81.3e-11299325127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               +++++C++++++G Ck+G++C+++H+p
  Niben101Scf00505g01005.1 299 PGQPECQYYMKYGDCKFGSSCRYHHPP 325
                               5789*********************97 PP
5zf-CCCH35.41.8e-11347371327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                ++C++++++G Ck+G++CkF H++
  Niben101Scf00505g01005.1 347 APICSHYSQNGVCKFGPSCKFDHPM 371
                               589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.7093159IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-63158IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-103458IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-63459IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-53757IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.55481109IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-781108IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-884108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-684108IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-586108IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446127155IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5127154IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9129154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6129155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.389298326IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-6298325IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-9300325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5302325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5343370IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-7344371IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.756344372IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8347371IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5349369IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MERYSGSQAM EGAPAMWQLS VGSGPESYPE RPNEADCIYY LRTGFCGYGS RCRFNHPPDR  60
DLVMGAARAI RGGGEGEYPE RVGQPVCQYY MRTGMCKFGA SCKYHHPRQG GGSPALMTHN  120
IYGYPLRPGE KECLFYMKTG QCKFGITCKF HHPQPAGVQV PVSAARPGAF PLPAAVPPPT  180
TYPAVQSPSV QSAQQYGVVA GNWPVVRPTL LPGSYLPGTY GPMLFPPGMV PAPGWTPYPA  240
SASQVPSLTA QPAAGAGPVY GLTQLSASAP AYMGPYTSLT ASIGPSGSIQ KEHVFPERPG  300
QPECQYYMKY GDCKFGSSCR YHHPPEWSGP KSGFILGAMG LPLRPGAPIC SHYSQNGVCK  360
FGPSCKFDHP MGISYSPSAS SLVDMPVAPY PVGSSVGTLA PSSSSSDLKH ELVSGSTKDA  420
FSTQTSSMST SSGSVGSMFS KGGPVSLSGV QQSIQSSTSS SGSSSTGRDG EAQTSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267357.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
SwissprotQ84W911e-151C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A314KY390.0A0A314KY39_NICAT; Zinc finger ccch domain-containing protein 32
STRINGXP_009802825.10.0(Nicotiana sylvestris)
STRINGXP_009631342.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-138C3H family protein