PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00503g07005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 298aa MW: 34304.8 Da PI: 5.3516 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 5.9e-20 | 98 | 148 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp++ ++r++lg+f taeeAa +++a+ +++g Niben101Scf00503g07005.1 98 KKFRGVRQRP-WGKWAAEIRDPVK---KTRIWLGTFETAEEAAMVYDQAAIQIRG 148 59********.**********654...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.59E-33 | 98 | 155 | No hit | No description |
SuperFamily | SSF54171 | 3.99E-22 | 99 | 156 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-31 | 99 | 156 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.261 | 99 | 156 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.2E-13 | 99 | 148 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-38 | 99 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-11 | 100 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-11 | 122 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MEGKFSQSIK KCVVHKSINT KHENKLTPKV VRICYTDCDA TDSSSDDDFD DKERKRVKKY 60 VTEIRLEKNL SCGDVKKSSN LRKKKKKTMD LKRNENVKKF RGVRQRPWGK WAAEIRDPVK 120 KTRIWLGTFE TAEEAAMVYD QAAIQIRGPD ALTNFMKPPV KKESVITSVS DYDSTGESEN 180 PCSPTSVLRH NENNVGVTAT KISSNEEMKD DRKRMEFVMQ NDQNKILLDD NLPLMDQCFL 240 KDFFDFRSPS PLMDDVLPVF CDDIDFPDVN FLDGNGVLDE DLESCTWDVN DFLEDHCC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-23 | 98 | 155 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-23 | 98 | 155 | 4 | 62 | ATERF1 |
3gcc_A | 1e-23 | 98 | 155 | 4 | 62 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019261521.1 | 0.0 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | A0A314LA26 | 0.0 | A0A314LA26_NICAT; Ethylene-responsive transcription factor crf3 | ||||
STRING | XP_009758972.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 3e-39 | cytokinin response factor 4 |