PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00496g02009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 441aa    MW: 49195.2 Da    PI: 6.8302
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00496g02009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43e-17148197155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Niben101Scf00496g02009.1 148 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 197
                               78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16148206IPR016177DNA-binding domain
PfamPF008472.0E-9148197IPR001471AP2/ERF domain
CDDcd000188.78E-12148207No hitNo description
SMARTSM003801.3E-30149211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-17149205IPR001471AP2/ERF domain
PROSITE profilePS5103217.82149205IPR001471AP2/ERF domain
CDDcd000182.74E-12240285No hitNo description
SuperFamilySSF541711.37E-6240285IPR016177DNA-binding domain
SMARTSM003802.7E-12241289IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MFDLNLGFEE FAMDDDTVHL SYETTTSDKL RELQMENSGT SNSSIVNVET SSTAGDDEFF  60
SCSDDRRHND GYAFDILRGN DYEESEFVTK ELFPLTGGES AAAELLSPQQ WLDLSANYGG  120
PAEQRIVVVP QQRQQVKKSR RGPRSKSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT  180
AHAAARAYDR AAIKFRGLDA DINFNVADYH DDLKQMSNFT KEEFVHILRR QSTGFSRGSS  240
KYRGVTLHKC GRWEARMGQF LGKKAYDKAA IKCSGREAVT NFELSTYEGE LSTEDNGGAS  300
HNLDLKLGIA SSSLADEQHG NTRQMHSPST TMGHKLPHDR QPLTDRPLLW NGVNTSVFPT  360
FKGTAIGKGM EIGFSPNWTR QDQHAYGGSP SVPLFSTAAS SGFANSTSAT AHQHHFSTVP  420
LPYHHSPSLA NLNFAHYYCR S
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250349.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK031e-95RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1J6I7L80.0A0A1J6I7L8_NICAT; Floral homeotic protein apetala 2
STRINGXP_009606014.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-92related to AP2.7