PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00495g02016.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 291aa MW: 31961.5 Da PI: 6.6913

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00495g02016.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	41.5	3.5e-13	1	30	49	78
EEETTT--SS--S-STTTT-------S--- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 fh l efD++krsC +rLa+hnerrrk+q+ Niben101Scf00495g02016.1 1 FHLLAEFDDGKRSCSKRLASHNERRRKPQT 30 9**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03110	4.8E-7	1	27	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.67E-10	1	32	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	13.46	1	28	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
FHLLAEFDDG KRSCSKRLAS HNERRRKPQT GSTSRFQGTS FATSSSLCQN ILGSSILDQP 60 KYEMEDWYKN VKVEDAADYS PGLTMPFTNG HSQSKSFCTS YHAEKLCPPF HDEEITAPTR 120 SKIDESSKSY LHDIEGSDFV IRPLVQSFSI GGDVLHFLDS TSTIQGISGI SNSGCAPSLL 180 SYQSQDSSKQ SSPIPTASHL ITPSSMLITI SAGVNSGESC FEQNLVSNSS NNCFINGIIH 240 GSEYVNAKDP LSCEYAPTID LLQSSSQLQR VKHQKLFHAR EAGHQCKNHL I

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001313103.1	1e-136	squamosa promoter-binding-like protein 6
Refseq	XP_009777325.1	1e-136	PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
Refseq	XP_009777331.1	1e-136	PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
TrEMBL	A0A125SZP2	1e-135	A0A125SZP2_TOBAC; Squamosa promoter binding protein NtabSPL6-2
TrEMBL	A0A1S4D7R5	1e-135	A0A1S4D7R5_TOBAC; squamosa promoter-binding-like protein 6
TrEMBL	A0A1U7WJ85	1e-135	A0A1U7WJ85_NICSY; squamosa promoter-binding-like protein 6 isoform X1
STRING	XP_009777325.1	1e-135	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	3e-10	SBP family protein