PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00482g08004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 434aa    MW: 47993 Da    PI: 7.9243
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00482g08004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.62.6e-07146167122
                       AP2   1 sgykGVrwdkkrgrWvAeIrdp 22 
                               s+y+GV++++++grW+++I+ +
  Niben101Scf00482g08004.1 146 SQYRGVTFYRRTGRWESHIWAY 167
                               78*****************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-5146185IPR016177DNA-binding domain
SMARTSM003804.3E-8147190IPR001471AP2/ERF domain
CDDcd000181.25E-10219264No hitNo description
SuperFamilySSF541716.54E-5219263IPR016177DNA-binding domain
SMARTSM003801.2E-8220268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MLDLNVNVIY DENYIVDEKL PEGSVADHES GASNSSSLRN AEATSSARGD DDTCSTRAGN  60
LFAFNFDILK FGGVDATNSR SNEFVTRQLF PVHDGELNRP GQTGRVNLSP GRSGFGDERT  120
VLQQQQQQQE KPQVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWAYDRA AIKFRGVDAD  180
INFSISDYEE DMKQMKDLGK EEFVHLLRRH SNGFSRGSSK FRGATLHKCG RWEARMGQFL  240
GKKAYDKAAI KTNGREAVTN FEPSAYEGEI NSEPQTEGSQ HDLDLNLGMS TSSSKENDKL  300
GGSYYHPYHM QDATKSKMDK PGPVIVGSSL LKGLPMTSKQ AHLCCGAYSN FSPTYEGRAS  360
DKRKDIGSSE GPSNWALQMP SQVDTAPLSM FYTAASSGFL TPATAFITSS ASPEAPSTNA  420
SQYCYQFSPY VPPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611312.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK033e-91RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1U7X6C00.0A0A1U7X6C0_NICSY; ethylene-responsive transcription factor RAP2-7-like isoform X2
STRINGXP_009611308.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.16e-93related to AP2.7