PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00482g03010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 177aa MW: 20781.8 Da PI: 10.5911

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00482g03010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.6e-18	3	63	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t++ql +L++l++k +p+ +e e ++++l +++ ++V++WFqN++a+e++ Niben101Scf00482g03010.1 3 RTRWKPTPQQLMILQDLYRKgLTNPNSSEVEMITSHLsmhgKIQWKNVFYWFQNHKARERQ 63 89***************99************99999***************97 PP
2	Wus_type_Homeobox	102.9	2.2e-33	2	64	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +rtRW Ptp+Q++iL++ly++Gl +Pn++e++ it++L+ +Gki+ kNVfyWFQN+kaRerqk Niben101Scf00482g03010.1 2 SRTRWKPTPQQLMILQDLYRKGLTNPNSSEVEMITSHLSMHGKIQWKNVFYWFQNHKARERQK 64 689***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.479	1	64	IPR001356	Homeobox domain
SMART	SM00389	1.3E-5	1	68	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-11	2	69	IPR009057	Homeodomain-like
CDD	cd00086	0.00269	3	65	No hit	No description
Pfam	PF00046	2.2E-15	3	63	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.8E-7	3	68	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MSRTRWKPTP QQLMILQDLY RKGLTNPNSS EVEMITSHLS MHGKIQWKNV FYWFQNHKAR 60 ERQKMRKQLL QKYSKDDDIR QLTINNNNPP SSSPSSSTTV SQVYSYSPPI FLHQVKATKE 120 VSPQMMNYLW GNRMMRMNGR DWILTTDKGS SNIVHCSNKV PLRTLELFPV ETTGFKD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009771344.1	1e-108	PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBL	A0A1U7W9L6	1e-106	A0A1U7W9L6_NICSY; WUSCHEL-related homeobox 3-like
STRING	XP_009771344.1	1e-107	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2959	19	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	7e-29	WOX family protein