PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00481g05001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 95aa    MW: 10882.2 Da    PI: 9.7337
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00481g05001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.9e-08448344
                              SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44
                              +WTt   +++ +a  ++ +g    +   Ia+++g g++ ++++ ++
  Niben101Scf00481g05001.1  4 NWTTKQNKRFEEALVMYEKGtsseRLQNIAKYVG-GKSVEEVRRHY 48
                              8*********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0028154IPR001005SANT/Myb domain
PROSITE profilePS5129310.43156IPR017884SANT domain
Gene3DG3DSA:1.10.10.602.4E-5358IPR009057Homeodomain-like
SuperFamilySSF466891.37E-11459IPR009057Homeodomain-like
CDDcd001671.03E-4448No hitNo description
PfamPF002498.2E-6448IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MATNWTTKQN KRFEEALVMY EKGTSSERLQ NIAKYVGGKS VEEVRRHYDL LVKDITQIEN  60
GQVPLPNYRT ATAPDTNARG GYANEQRHLK NLSLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-205951193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233800.11e-60PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB86e-28RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1J6KAR33e-59A0A1J6KAR3_NICAT; Protein radialis-like 1
STRINGXP_009796752.12e-58(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-30RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]