PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00472g02011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 120aa    MW: 13837 Da    PI: 9.2341
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00472g02011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.74e-15349450
                              -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                    SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                              e++ n++ t+  R++ i  K  ELS+LCd++ + ii s++g+l++++
  Niben101Scf00472g02011.1  3 EENQNKKKTYQVRKECIKRKTMELSTLCDIKCCTIITSPQGELQTWP 49
                              67889999**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.876148IPR002100Transcription factor, MADS-box
PfamPF003191.2E-10348IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-15374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MAEENQNKKK TYQVRKECIK RKTMELSTLC DIKCCTIITS PQGELQTWPE NLDAVKQVLN  60
LYTKTLTPKQ KANKESSQEE IDILTLVESK LDAVNNRIRY LENKNAGFVS NNKGKKQMIE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776067.15e-73PREDICTED: MADS-box transcription factor 56-like
RefseqXP_016469068.15e-73PREDICTED: agamous-like MADS-box protein AGL81
TrEMBLA0A1S3ZXJ41e-71A0A1S3ZXJ4_TOBAC; agamous-like MADS-box protein AGL81
TrEMBLA0A1U7W7S81e-71A0A1U7W7S8_NICSY; MADS-box transcription factor 56-like
STRINGXP_009776067.12e-72(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37231639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26880.11e-10AGAMOUS-like 26