PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00472g01008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ZF-HD | ||||||||
Protein Properties | Length: 176aa MW: 19519.4 Da PI: 7.2743 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 67.4 | 2.5e-21 | 10 | 61 | 4 | 56 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 +rY eClkNh + G + +DGC+Ef++s ge+gt+ + Ca CgC R+FHR + Niben101Scf00472g01008.1 10 IRYGECLKNHSKKHGHYLFDGCREFVKS-GEDGTKGSYICANCGCIRSFHRMN 61 79*************************9.999*******************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.4E-20 | 10 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-11 | 10 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.0E-15 | 11 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 19.106 | 12 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MASNSSSTPI RYGECLKNHS KKHGHYLFDG CREFVKSGED GTKGSYICAN CGCIRSFHRM 60 NNLPLHRHQA IRLCFFHHCV IPNGMQPNFH PFMATAAETQ VSVSAASLPV TVTSNHESFS 120 VQENVPYVMT PTMLPLFPLY PMDEMGPVPV PLPLFPETPS SGTFGLLKGK QDMDMD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A314LBP5 | 2e-98 | A0A314LBP5_NICAT; Mini zinc finger protein 4 | ||||
STRING | Solyc01g103810.1.1 | 1e-29 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13748 | 6 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 1e-16 | mini zinc finger 2 |