PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00454g02008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 22645.1 Da PI: 9.186 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.8e-18 | 114 | 164 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrdp + k r++lg+f+t +Aa+a++ a+ k++g Niben101Scf00454g02008.1 114 NYRGVRRRP-WGKFAAEIRDP---NkKGSRIWLGTFDTDVDAARAYDCAAFKMRG 164 59*******.**********9...4345**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.9E-23 | 114 | 173 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-38 | 114 | 178 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-32 | 114 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-13 | 114 | 164 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.579 | 114 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-13 | 115 | 126 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.26E-32 | 115 | 174 | No hit | No description |
PRINTS | PR00367 | 4.6E-13 | 154 | 174 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:1902074 | Biological Process | response to salt | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MTTQKERLTL ELIRHHLLED FTSTESFINS LNSCFSDQIS PVFTSVKTEP STSNNSLSDS 60 PTSYPNSPIS HYFSDFPEFK TNSDTNLSPT SDSCVSSNLT ISSDTNNNEN KTKNYRGVRR 120 RPWGKFAAEI RDPNKKGSRI WLGTFDTDVD AARAYDCAAF KMRGRKAILN FPIDDGKSGA 180 PANIGRKRRR GNGIQHEILI NL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-29 | 113 | 173 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 184 | 190 | GRKRRRG |
2 | 185 | 189 | RKRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019257925.1 | 1e-129 | PREDICTED: ethylene-responsive transcription factor ERF106-like | ||||
TrEMBL | A0A1J6HU70 | 1e-128 | A0A1J6HU70_NICAT; Ethylene-responsive transcription factor erf106 | ||||
STRING | XP_009771892.1 | 1e-125 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 2e-45 | ERF family protein |