PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00448g01012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 218aa    MW: 25416.3 Da    PI: 6.7919
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00448g01012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.7e-151461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+W++eEd +l+  v+++G ++W+  +++ g+ R +k+c++rw +yl
  Niben101Scf00448g01012.1 14 RGAWSEEEDNKLKAFVERFGHPNWRQLPKHAGLMRYGKSCRLRWINYL 61
                              89********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-19664IPR009057Homeodomain-like
PROSITE profilePS5129422.397965IPR017930Myb domain
SMARTSM007173.8E-111363IPR001005SANT/Myb domain
SuperFamilySSF466895.74E-181484IPR009057Homeodomain-like
PfamPF002491.5E-131461IPR001005SANT/Myb domain
CDDcd001672.67E-91661No hitNo description
PROSITE profilePS500904.1246483IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.7E-66589IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVRTPSVDKN GIKRGAWSEE EDNKLKAFVE RFGHPNWRQL PKHAGLMRYG KSCRLRWINY  60
LRPAARLPGR SDNDVKNQWH AHLKKRAKTN TNNLPIMEQF SESSQSGSQS ERSSYNLWEQ  120
EAVGDSMREV PSASLNAIDT SATSTEVSST DLSELYSSCS LLNRMEYWIE EDHISSMQQL  180
PADFLNFCWT NPIYNFQTEP LDNFQTETLD HFWRRPFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18288LKKRAKT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267259.11e-122PREDICTED: myb-related protein Myb4-like
TrEMBLA0A314KYX71e-120A0A314KYX7_NICAT; Myb-related protein myb4
STRINGXP_009766826.11e-103(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-35myb domain protein 14