PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00448g01012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 218aa MW: 25416.3 Da PI: 6.7919 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.7 | 1.7e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ v+++G ++W+ +++ g+ R +k+c++rw +yl Niben101Scf00448g01012.1 14 RGAWSEEEDNKLKAFVERFGHPNWRQLPKHAGLMRYGKSCRLRWINYL 61 89********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-19 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.397 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.74E-18 | 14 | 84 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.67E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 4.124 | 64 | 83 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-6 | 65 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MVRTPSVDKN GIKRGAWSEE EDNKLKAFVE RFGHPNWRQL PKHAGLMRYG KSCRLRWINY 60 LRPAARLPGR SDNDVKNQWH AHLKKRAKTN TNNLPIMEQF SESSQSGSQS ERSSYNLWEQ 120 EAVGDSMREV PSASLNAIDT SATSTEVSST DLSELYSSCS LLNRMEYWIE EDHISSMQQL 180 PADFLNFCWT NPIYNFQTEP LDNFQTETLD HFWRRPFF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 88 | LKKRAKT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019267259.1 | 1e-122 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A314KYX7 | 1e-120 | A0A314KYX7_NICAT; Myb-related protein myb4 | ||||
STRING | XP_009766826.1 | 1e-103 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 1e-35 | myb domain protein 14 |