PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00446g05004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 267aa    MW: 30867.6 Da    PI: 6.1887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00446g05004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08154194954
                               HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Niben101Scf00446g05004.1 154 ARLRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 194
                               699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-15150212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-13151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-13151208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-10151199No hitNo description
PfamPF000107.9E-6155194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDINHHLKLT TSTWEPTMAN MDDHIFDDHH HQQQEQEQEQ QRQFPFDHNP IWPSFPLQNP  60
HHHLPSFSSE LQRQRQQPVP FDHVVNNHVQ TLIEDHHDQE PEDDEEEEEE ELGAMKEMMF  120
KIAAMQPVDI DPATIRKPKR RNVRISNDPQ SVAARLRRER ISEKIRILQR LVPGGTKMDT  180
ASMLDEAIRY VKFLKRQVRQ LQSSNHHLPP SQLPVVPCPS TENWANIITP TKALILGPSS  240
MTNTTIATTA TFVGNSASDR TYEVIGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159RLRRER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783821.11e-152PREDICTED: transcription factor HEC3-like
RefseqXP_016456067.11e-152PREDICTED: transcription factor HEC3-like
TrEMBLA0A1S3YVT81e-150A0A1S3YVT8_TOBAC; transcription factor HEC3-like
TrEMBLA0A1U7X2C51e-150A0A1U7X2C5_NICSY; transcription factor HEC3-like
STRINGXP_009783821.11e-151(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.12e-45bHLH family protein