PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00428g10006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 247aa    MW: 27743.8 Da    PI: 5.4109
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00428g10006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.8e-18141191255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr ++ +g+++AeIrdp +ng  +r++lg++ tae+Aa a+++a+ +++g
  Niben101Scf00428g10006.1 141 HYRGVRVRR-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAAFAYDKAAFRMRG 191
                               8*****998.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-30140199IPR001471AP2/ERF domain
CDDcd000182.16E-29140199No hitNo description
SMARTSM003806.5E-36141205IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22141201IPR016177DNA-binding domain
PfamPF008472.6E-11141191IPR001471AP2/ERF domain
PROSITE profilePS5103223.38141199IPR001471AP2/ERF domain
PRINTSPR003673.1E-9142153IPR001471AP2/ERF domain
PRINTSPR003673.1E-9165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MYGNEEYDND YALLESIKCH LLDDWDTTPV TSSDNSTTSV YSRNNSIESH MFPNCLPNEF  60
DYTADTFLHD ILNEGNGYEL EPSNFTIPGV KLEPEMTLQS PEIWDFTNFT EFVVPPETAA  120
EVKVEPPVVT RKAAAPPKAK HYRGVRVRRW GKFAAEIRDP AKNGARVWLG TYETAEDAAF  180
AYDKAAFRMR GSRALLNFPL RINSGDPDPV RVGSKRLSTS PEHSSSSPKK RKQNGSGRYT  240
QLGADQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-38138206270ATERF1
3gcc_A4e-38138206270ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234988.11e-154PREDICTED: ethylene-responsive transcription factor 1A-like
TrEMBLA0A1J6KXK71e-153A0A1J6KXK7_NICAT; Ethylene-responsive transcription factor 1a
STRINGXP_009608915.11e-146(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.14e-45ethylene responsive element binding factor 2